DNase-seq_ENCSR645HET
DNase-seq ENCSR645HET [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (87 years)"]
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| Id: | DNase-seq/ENCSR645HET |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR645HET [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (87 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (87 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF163PSF|/files/ENCFF163PSF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR645HET | float |
DNase-seq_ENCSR645HET |
DNase-seq ENCSR645HET [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (87 years)"]
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[0.0624, 20] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF261ORB.bed.gz | 998.9 KB | e33f9fbf0a7cab2e9d4cc9f93a3e9c1c |
| ENCFF261ORB.bed.gz.dvc | 101.0 B | 39a72d2a88f92e33a4c13eb8b998d006 |
| ENCFF261ORB.tabix.bed.gz | 911.95 KB | dd3a9cf9b0fff1699d11c25e510c2f7c |
| ENCFF261ORB.tabix.bed.gz.dvc | 106.0 B | 1f222b3a3208858f84c897e861938dae |
| ENCFF261ORB.tabix.bed.gz.tbi | 338.81 KB | 9eb9a9e59d410413f56b9425e8b2dedd |
| ENCFF261ORB.tabix.bed.gz.tbi.dvc | 110.0 B | 9f43bb0c216a6a7295e9d131dc728467 |
| genomic_resource.yaml | 2.09 KB | 0def1a28776d5df2e0f6c15d82033ec3 |
| genomic_resource_original.yaml | 1.97 KB | 5b48f3d53051967ba10b2b735b01b93e |
| statistics/ |