Resource
| Id | DNase-seq/ENCSR645HET |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR645HET [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (87 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (87 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF163PSF|/files/ENCFF163PSF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR645HET | float |
DNase-seq_ENCSR645HET |
DNase-seq ENCSR645HET [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (87 years)"]
|
 |
[0.0624, 20] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 17159502 | 0.53% | 92632 |
| chr1 | 1642336 | 0.66% | 8783 |
| chr2 | 1490521 | 0.62% | 7983 |
| chr3 | 954557 | 0.48% | 5177 |
| chr4 | 591320 | 0.31% | 3269 |
| chr5 | 875956 | 0.48% | 4743 |
| chr6 | 778918 | 0.46% | 4285 |
| chr7 | 842551 | 0.53% | 4610 |
| chr8 | 771473 | 0.53% | 4183 |
| chr9 | 798644 | 0.58% | 4347 |
| chr10 | 945087 | 0.71% | 5093 |
| chr11 | 1013622 | 0.75% | 5378 |
| chr12 | 751739 | 0.56% | 4045 |
| chr13 | 318141 | 0.28% | 1747 |
| chr14 | 542892 | 0.51% | 2963 |
| chr15 | 595644 | 0.58% | 3220 |
| chr16 | 630586 | 0.70% | 3379 |
| chr17 | 839532 | 1.01% | 4531 |
| chr18 | 355996 | 0.44% | 1894 |
| chr19 | 758456 | 1.29% | 3945 |
| chr20 | 556423 | 0.86% | 3052 |
| chr21 | 223205 | 0.48% | 1205 |
| chr22 | 504714 | 0.99% | 2698 |
| chrX | 360193 | 0.23% | 2003 |
| chrY | 16996 | 0.03% | 99 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 92632 | 1 | 1080 | 185.24 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF261ORB.bed.gz | 998.9 KB | e33f9fbf0a7cab2e9d4cc9f93a3e9c1c |
| ENCFF261ORB.tabix.bed.gz | 911.95 KB | dd3a9cf9b0fff1699d11c25e510c2f7c |
| ENCFF261ORB.tabix.bed.gz.tbi | 338.81 KB | 9eb9a9e59d410413f56b9425e8b2dedd |
| genomic_resource.yaml | 2.09 KB | 0def1a28776d5df2e0f6c15d82033ec3 |
| statistics/ |