DNase-seq_ENCSR645GJD
DNase-seq ENCSR645GJD [biosample_summary="Homo sapiens kidney tissue female embryo (113 days)"]
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| Id: | DNase-seq/ENCSR645GJD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR645GJD [biosample_summary="Homo sapiens kidney tissue female embryo (113 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (113 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF544EKH|/files/ENCFF544EKH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR645GJD | float |
DNase-seq_ENCSR645GJD |
DNase-seq ENCSR645GJD [biosample_summary="Homo sapiens kidney tissue female embryo (113 days)"]
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[0.121, 18.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF931HGM.bed.gz | 845.87 KB | 02b03c2ad218eaf9344c7979ba959635 |
| ENCFF931HGM.bed.gz.dvc | 100.0 B | b300090ee81270e371a66fe8d247592b |
| ENCFF931HGM.tabix.bed.gz | 769.7 KB | b6aedc209bb12be22e827096a8adc10f |
| ENCFF931HGM.tabix.bed.gz.dvc | 106.0 B | 7bb993f4eef3d0c978e2de5d534eab60 |
| ENCFF931HGM.tabix.bed.gz.tbi | 387.32 KB | 787e8f4947f7348c9554d287becd0274 |
| ENCFF931HGM.tabix.bed.gz.tbi.dvc | 110.0 B | aa2aa33edb609ef3dbbb5802f5de0c4a |
| genomic_resource.yaml | 2.03 KB | 65073c4a27f264b0f11f201e37e12390 |
| genomic_resource_original.yaml | 1.93 KB | 282bba41be0de95f76a7548f35e96281 |
| statistics/ |