Resource

Id DNase-seq/ENCSR642BXPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR642BXP [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-12 subunit beta for 1 hour, Interleukin-12 subunit alpha for 1 hour"]
Description
Labels
  • accession: ENCSR642BXP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-12 subunit beta for 1 hour, Interleukin-12 subunit alpha for 1 hour
  • date_created: 2018-11-30T18:43:54.178106+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR642BXP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (39 years) treated with Interleukin-12 subunit beta for 1 hour, Interleukin-12 subunit alpha for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR642BXP float

DNase-seq_ENCSR642BXP
DNase-seq ENCSR642BXP [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-12 subunit beta for 1 hour, Interleukin-12 subunit alpha for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR642BXP [0.0536, 73.7]
n
17,272,788
mean
4.51
sd
8.48

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 172727880.54% 87543
chr1 1741950 0.70% 8780
chr2 1240499 0.51% 6359
chr3 959442 0.48% 4922
chr4 647834 0.34% 3307
chr5 814720 0.45% 4129
chr6 1059554 0.62% 5299
chr7 802744 0.50% 4106
chr8 659382 0.45% 3422
chr9 689804 0.50% 3529
chr10 812220 0.61% 4101
chr11 893283 0.66% 4528
chr12 894106 0.67% 4513
chr13 372044 0.33% 1911
chr14 635451 0.59% 3164
chr15 551086 0.54% 2821
chr16 638794 0.71% 3230
chr17 953150 1.14% 4786
chr18 298482 0.37% 1553
chr19 989148 1.69% 4796
chr20 465879 0.72% 2406
chr21 206617 0.44% 1044
chr22 382602 0.75% 1953
chrX 537612 0.34% 2747
chrY 26385 0.05% 137
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 87543 1 1140 197.31 197
global segment-length histogram

Files

Filename Size md5
ENCFF241PYN.bed.gz 982.79 KB 9583469acc3900cef55817ba4da45679
ENCFF241PYN.tabix.bed.gz 898.5 KB 3a28b6360bd45ec2248848fca504fb5b
ENCFF241PYN.tabix.bed.gz.tbi 338.93 KB b292a147314c8a6f6f0e0d34bfc8a6c2
genomic_resource.yaml 1.74 KB 660a791fb6cf6405499fe9046f34532c
statistics/