Resource

Id DNase-seq/ENCSR641ZPFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR641ZPF [biosample_summary="Homo sapiens stomach tissue female adult (51 years)"]
Description
Labels
  • accession: ENCSR641ZPF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue female adult (51 years)
  • date_created: 2016-12-27T19:58:48.308883+00:00
  • date_released: 2017-10-02
  • doi: 10.17989/ENCSR641ZPF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR641ZPF float

DNase-seq_ENCSR641ZPF
DNase-seq ENCSR641ZPF [biosample_summary="Homo sapiens stomach tissue female adult (51 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR641ZPF [1, 9.09e+03]
n
27,036,908
mean
51.8
sd
55.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 270369080.84% 179095
chr1 2429894 0.98% 16121
chr2 2638165 1.09% 17465
chr3 1547096 0.78% 10250
chr4 864611 0.45% 5733
chr5 1356125 0.75% 8976
chr6 1343054 0.79% 8891
chr7 1305802 0.82% 8638
chr8 1259818 0.87% 8348
chr9 1129816 0.82% 7479
chr10 1947058 1.46% 12907
chr11 1451533 1.07% 9623
chr12 933101 0.70% 6189
chr13 670152 0.59% 4442
chr14 855814 0.80% 5657
chr15 1050736 1.03% 6961
chr16 923590 1.02% 6116
chr17 958623 1.15% 6349
chr18 783615 0.97% 5184
chr19 783906 1.34% 5203
chr20 944232 1.47% 6253
chr21 440319 0.94% 2913
chr22 638498 1.26% 4231
chrX 760893 0.49% 5031
chrY 20457 0.04% 135
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 179095 7 556 150.96 150
global segment-length histogram

Files

Filename Size md5
ENCFF151DGI.bed.gz 1.6 MB 646f54b2698b5e4e33ef188f3f4c96b7
ENCFF151DGI.tabix.bed.gz 1.38 MB 4f83ea1946579b9d095b5841e4f8dc3a
ENCFF151DGI.tabix.bed.gz.tbi 294.64 KB 8482db50b12695e180b573e093c551b0
genomic_resource.yaml 1.39 KB 4668918d6fc699db7d0a429dbde9ebec
statistics/