Resource

Id DNase-seq/ENCSR639VTOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR639VTO [biosample_summary="Homo sapiens with Cognitive impairment; head of caudate nucleus tissue female adult (81 years)"]
Description
Labels
  • accession: ENCSR639VTO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens with Cognitive impairment; head of caudate nucleus tissue female adult (81 years)
  • date_created: 2021-04-01T15:48:57.279811+00:00
  • date_released: 2021-06-17
  • doi: 10.17989/ENCSR639VTO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (81 years) with Cognitive impairment
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR639VTO float

DNase-seq_ENCSR639VTO
DNase-seq ENCSR639VTO [biosample_summary="Homo sapiens with Cognitive impairment; head of caudate nucleus tissue female adult (81 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR639VTO [0.0438, 32.5]
n
27,667,917
mean
1.73
sd
2.89

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 276679170.86% 142890
chr1 2562144 1.03% 13244
chr2 2393985 0.99% 12405
chr3 1400125 0.71% 7248
chr4 932877 0.49% 4769
chr5 1289255 0.71% 6709
chr6 1194466 0.70% 6196
chr7 1433453 0.90% 7479
chr8 1234036 0.85% 6368
chr9 1284064 0.93% 6629
chr10 1597713 1.19% 8244
chr11 1539894 1.14% 7898
chr12 1157214 0.87% 5924
chr13 538632 0.47% 2842
chr14 909520 0.85% 4695
chr15 1002816 0.98% 5182
chr16 1053205 1.17% 5505
chr17 1499367 1.80% 7712
chr18 613003 0.76% 3156
chr19 1188839 2.03% 6006
chr20 906098 1.41% 4689
chr21 400638 0.86% 2062
chr22 951824 1.87% 4889
chrX 583789 0.37% 3031
chrY 960 <0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 142890 1 1160 193.63 180
global segment-length histogram

Files

Filename Size md5
ENCFF659ZKO.bed.gz 1.48 MB d6fb567c7ce69d0fac2fa042c5abb662
ENCFF659ZKO.tabix.bed.gz 1.36 MB fb4ef68f3b724542876a9d4913731cb0
ENCFF659ZKO.tabix.bed.gz.tbi 384.13 KB 1aa181b95f47a797286c65088d2fea7c
genomic_resource.yaml 1.39 KB 310123d79e48a1217f54e2da488e5f5a
statistics/