DNase-seq_ENCSR637ZLM
DNase-seq ENCSR637ZLM [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR637ZLM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR637ZLM [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF561NEE|/files/ENCFF561NEE/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR637ZLM | float |
DNase-seq_ENCSR637ZLM |
DNase-seq ENCSR637ZLM [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (90 or above years)"]
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[0.0805, 22.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF922ZXC.bed.gz | 823.75 KB | b37f274f32feeb87f8bbf0f959a147d0 |
| ENCFF922ZXC.bed.gz.dvc | 100.0 B | 5ae71bd945ee2dd4d7f9149f0e5c13da |
| ENCFF922ZXC.tabix.bed.gz | 748.79 KB | 1e303cea26229bbe5835d71a925a0329 |
| ENCFF922ZXC.tabix.bed.gz.dvc | 106.0 B | df6a48911689e8e4bbfb9d4f44924cc0 |
| ENCFF922ZXC.tabix.bed.gz.tbi | 294.43 KB | b9835c9aa4373a80d8fce590e32e0d7f |
| ENCFF922ZXC.tabix.bed.gz.tbi.dvc | 110.0 B | 80815c6a9c8bd9a51290f0cb244d88ea |
| genomic_resource.yaml | 2.12 KB | 2bafba5405fb100b858ba9c9b95bfc53 |
| genomic_resource_original.yaml | 2.0 KB | 48c9759f8e23fe4d26a5649278ae3b92 |
| statistics/ |