Resource

Id DNase-seq/ENCSR637IGLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR637IGL [biosample_summary="Homo sapiens thoracic segment muscle tissue female embryo (108 days)"]
Description
Labels
  • accession: ENCSR637IGL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0003830/
  • biosample_summary: Homo sapiens thoracic segment muscle tissue female embryo (108 days)
  • date_created: 2015-09-16T21:42:41.699725+00:00
  • date_released: 2013-07-31
  • doi:
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (108 days)
  • status: released
  • submitter_comment: This experiment was originally revoked due to concerns of biosample mislabeling, but has been unrevoked on Sept 8, 2025 after a lab review determined the biosample was not mislabeled.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR637IGL float

DNase-seq_ENCSR637IGL
DNase-seq ENCSR637IGL [biosample_summary="Homo sapiens thoracic segment muscle tissue female embryo (108 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR637IGL [4, 1.7e+03]
n
18,984,221
mean
72.6
sd
90.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 189842210.59% 126219
chr1 1675899 0.67% 11147
chr1_KI270706v1_random 150 0.09% 1
chr1_KI270711v1_random 150 0.36% 1
chr1_KI270713v1_random 750 1.84% 5
chr1_KI270714v1_random 150 0.36% 1
chr2 1574992 0.65% 10477
chr3 1261841 0.64% 8392
chr4 1031226 0.54% 6843
chr5 1119795 0.62% 7438
chr6 1180524 0.69% 7850
chr7 981662 0.62% 6524
chr8 895181 0.62% 5945
chr9 805906 0.58% 5352
chr9_KI270719v1_random 150 0.08% 1
chr10 947968 0.71% 6301
chr11 957927 0.71% 6375
chr11_KI270721v1_random 150 0.15% 1
chr12 924592 0.69% 6153
chr13 579811 0.51% 3861
chr14 576758 0.54% 3833
chr14_GL000225v1_random 2100 0.99% 14
chr15 603017 0.59% 4012
chr16 565975 0.63% 3764
chr16_KI270728v1_random 150 0.01% 1
chr17 706439 0.85% 4702
chr17_GL000205v2_random 1050 0.57% 7
chr17_KI270729v1_random 900 0.32% 6
chr17_KI270730v1_random 150 0.13% 1
chr18 459495 0.57% 3051
chr19 549663 0.94% 3658
chr20 465890 0.72% 3100
chr21 223249 0.48% 1485
chr22 300546 0.59% 2001
chr22_KI270733v1_random 851 0.47% 7
chr22_KI270736v1_random 150 0.08% 1
chr22_KI270738v1_random 150 0.15% 1
chrM 3600 21.73% 24
chrUn_GL000195v1 1050 0.57% 7
chrUn_GL000214v1 150 0.11% 1
chrUn_GL000216v2 750 0.42% 5
chrUn_GL000219v1 1200 0.67% 8
chrUn_GL000220v1 600 0.37% 4
chrUn_GL000224v1 300 0.17% 2
chrUn_KI270333v1 300 11.12% 2
chrUn_KI270336v1 150 14.62% 1
chrUn_KI270438v1 3000 2.67% 20
chrUn_KI270442v1 450 0.11% 3
chrUn_KI270466v1 150 12.17% 1
chrUn_KI270467v1 1050 26.79% 7
chrUn_KI270519v1 150 0.11% 1
chrUn_KI270538v1 150 0.16% 1
chrX 575364 0.37% 3817
chrY 450 <0.01% 3
3313 contigs with no values (123598854 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 126219 16 450 150.41 150
global segment-length histogram

Files

Filename Size md5
ENCFF128OCR.bed.gz 1.2 MB 76bd5174fe91802da448b30f56a88d0d
ENCFF128OCR.tabix.bed.gz 1.03 MB a8b8c57294f06ea011620f9fb9207946
ENCFF128OCR.tabix.bed.gz.tbi 542.82 KB d874a4645ede9ab4600029a24bead803
genomic_resource.yaml 1.44 KB cb5b8903ed72ce2cd880d64bd0fb1806
statistics/