Resource

Id DNase-seq/ENCSR635VQUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR635VQU [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-4 for 4 hours"]
Description
Labels
  • accession: ENCSR635VQU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-4 for 4 hours
  • date_created: 2018-11-30T18:43:54.810493+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR635VQU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (39 years) treated with Interleukin-4 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR635VQU float

DNase-seq_ENCSR635VQU
DNase-seq ENCSR635VQU [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-4 for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR635VQU [0.074, 69.3]
n
15,723,606
mean
3.35
sd
5.84

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 157236060.49% 82717
chr1 1570570 0.63% 8263
chr2 1209200 0.50% 6329
chr3 937125 0.47% 4958
chr4 600284 0.32% 3191
chr5 750795 0.41% 3966
chr6 974735 0.57% 5096
chr7 727643 0.46% 3853
chr8 631968 0.44% 3344
chr9 608421 0.44% 3228
chr10 745650 0.56% 3902
chr11 776647 0.57% 4103
chr12 822413 0.62% 4325
chr13 356629 0.31% 1872
chr14 570572 0.53% 3002
chr15 492221 0.48% 2632
chr16 578811 0.64% 3009
chr17 844703 1.01% 4418
chr18 269605 0.34% 1442
chr19 797268 1.36% 4069
chr20 423189 0.66% 2240
chr21 183745 0.39% 980
chr22 340104 0.67% 1787
chrX 485009 0.31% 2574
chrY 26299 0.05% 134
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82717 3 940 190.09 187
global segment-length histogram

Files

Filename Size md5
ENCFF965KSG.bed.gz 916.46 KB 31141a8b3a32a01c4cd53981c45afb61
ENCFF965KSG.tabix.bed.gz 839.96 KB f2514a817c9d449e12e1d434bd649598
ENCFF965KSG.tabix.bed.gz.tbi 326.65 KB 8dcddde3863cc695411107882efeb282
genomic_resource.yaml 1.46 KB 013ecee805c2f4f660c59e4bff719561
statistics/