DNase-seq_ENCSR635URJ
DNase-seq ENCSR635URJ [biosample_summary="Homo sapiens T-cell female adult (25 years)"]
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| Id: | DNase-seq/ENCSR635URJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR635URJ [biosample_summary="Homo sapiens T-cell female adult (25 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (25 years) output_type: peaks audit_warning: Alignment file {ENCFF304ENV|/files/ENCFF304ENV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 35161756 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR635URJ | float |
DNase-seq_ENCSR635URJ |
DNase-seq ENCSR635URJ [biosample_summary="Homo sapiens T-cell female adult (25 years)"]
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[0.313, 81.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF495BUD.bed.gz | 444.86 KB | 8fbdd5de48892b40d07055e447ce4733 |
| ENCFF495BUD.bed.gz.dvc | 100.0 B | 57788d1c67118b1e13e55ceeb301a41f |
| ENCFF495BUD.tabix.bed.gz | 403.46 KB | 764cb963f93ed1bbe8b5d8ec3bd0cf23 |
| ENCFF495BUD.tabix.bed.gz.dvc | 106.0 B | fe0cd2a676e776296423469e1936cefa |
| ENCFF495BUD.tabix.bed.gz.tbi | 199.39 KB | f4c5289b9eb892a34c0284d2dbcaf918 |
| ENCFF495BUD.tabix.bed.gz.tbi.dvc | 110.0 B | 7f4a66641c655843f8bd302e47f7560b |
| genomic_resource.yaml | 1.8 KB | babe6a6a65db58015c30727841110528 |
| genomic_resource_original.yaml | 1.71 KB | 798a9ebb49f4cb688f4e2eed9addef95 |
| statistics/ |