| Id: | DNase-seq/ENCSR634ZYB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR634ZYB [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF804HWB|/files/ENCFF804HWB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 35997496 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR634ZYB | float |
DNase-seq_ENCSR634ZYB |
DNase-seq ENCSR634ZYB [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours"]
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[0.251, 48.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF934POI.bed.gz | 488.45 KB | 622b06306b4ab6c44809b7935d0fbf4d |
| ENCFF934POI.bed.gz.dvc | 100.0 B | a2aad81a71823e76221a4783e5c8096f |
| ENCFF934POI.tabix.bed.gz | 442.76 KB | d63b14fea3fc261968ec250ddc4e89b1 |
| ENCFF934POI.tabix.bed.gz.dvc | 106.0 B | 9ef37178a67298cf613f318ebb8bb639 |
| ENCFF934POI.tabix.bed.gz.tbi | 227.01 KB | b9bb377b5a17e944c8f8401d80f81b14 |
| ENCFF934POI.tabix.bed.gz.tbi.dvc | 110.0 B | 8d7db03125e80ba50d5001a51a49e832 |
| genomic_resource.yaml | 2.65 KB | a43710d7224f95fda0833a7f4a40f2b6 |
| genomic_resource_original.yaml | 2.39 KB | df3b8cafadd077dcd1ab35336512cbbd |
| statistics/ |