Resource

Id DNase-seq/ENCSR634ZYBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR634ZYB [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours"]
Description
Labels
  • accession: ENCSR634ZYB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours
  • date_created: 2020-04-18T22:21:50.701673+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR634ZYB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR634ZYB float

DNase-seq_ENCSR634ZYB
DNase-seq ENCSR634ZYB [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR634ZYB [0.251, 48.3]
n
8,110,592
mean
6.12
sd
6.18

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 81105920.25% 44442
chr1 822599 0.33% 4510
chr2 577836 0.24% 3172
chr3 445415 0.22% 2442
chr4 289167 0.15% 1577
chr5 359495 0.20% 1979
chr6 475786 0.28% 2596
chr7 366144 0.23% 2043
chr8 300267 0.21% 1659
chr9 320654 0.23% 1743
chr10 363835 0.27% 2016
chr11 417111 0.31% 2260
chr12 426332 0.32% 2336
chr13 167810 0.15% 921
chr14 283814 0.27% 1558
chr15 264289 0.26% 1474
chr16 329997 0.37% 1802
chr17 484296 0.58% 2618
chr18 125344 0.16% 696
chr19 530012 0.90% 2812
chr20 223233 0.35% 1257
chr21 94550 0.20% 525
chr22 196608 0.39% 1086
chrX 245888 0.16% 1359
chrY 110 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44442 10 680 182.5 180
global segment-length histogram

Files

Filename Size md5
ENCFF934POI.bed.gz 488.45 KB 622b06306b4ab6c44809b7935d0fbf4d
ENCFF934POI.tabix.bed.gz 442.76 KB d63b14fea3fc261968ec250ddc4e89b1
ENCFF934POI.tabix.bed.gz.tbi 227.01 KB b9bb377b5a17e944c8f8401d80f81b14
genomic_resource.yaml 2.65 KB a43710d7224f95fda0833a7f4a40f2b6
statistics/