Resource

Id DNase-seq/ENCSR634YVQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR634YVQ [biosample_summary="Homo sapiens HK-2"]
Description
Labels
  • accession: ENCSR634YVQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_CLO_0003771/
  • biosample_summary: Homo sapiens HK-2
  • date_created: 2018-04-26T05:12:25.616677+00:00
  • date_released: 2018-05-09
  • doi: 10.17989/ENCSR634YVQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR634YVQ float

DNase-seq_ENCSR634YVQ

DNase-seq ENCSR634YVQ [biosample_summary="Homo sapiens HK-2"]
HISTOGRAM FOR DNase-seq_ENCSR634YVQ [0.0735, 29.9]
n
19,405,239
mean
3.2
sd
3.34

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 194052390.60% 90897
chr1 1974423 0.79% 9093
chr2 1486832 0.61% 7078
chr3 1136955 0.57% 5429
chr4 870762 0.46% 4122
chr5 881132 0.49% 4190
chr6 1157987 0.68% 5374
chr7 960251 0.60% 4516
chr8 801395 0.55% 3811
chr9 823998 0.60% 3827
chr10 954407 0.71% 4488
chr11 873793 0.65% 4124
chr12 955706 0.72% 4467
chr13 382867 0.33% 1859
chr14 651603 0.61% 2983
chr15 566211 0.56% 2675
chr16 722650 0.80% 3374
chr17 1049897 1.26% 4768
chr18 357903 0.45% 1746
chr19 962752 1.64% 4277
chr20 624199 0.97% 2981
chr21 187854 0.40% 898
chr22 435404 0.86% 2039
chrX 583650 0.37% 2761
chrY 2608 <0.01% 17
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 90897 1 1420 213.49 200
global segment-length histogram

Files

Filename Size md5
ENCFF129IYX.bed.gz 985.76 KB c3bc24bb588e598c70f6f478a80433ca
ENCFF129IYX.tabix.bed.gz 905.44 KB 7dc001a113918513f59ad9d1b0b99be2
ENCFF129IYX.tabix.bed.gz.tbi 381.96 KB 436f846ac02fe19ed38fd0566be8ab9a
genomic_resource.yaml 1.07 KB a2018a849f710d4be936ab4e80dc092e
statistics/