DNase-seq_ENCSR632ONQ
DNase-seq ENCSR632ONQ [biosample_summary="Homo sapiens lower lobe of left lung tissue female adult (59 years)"]
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| Id: | DNase-seq/ENCSR632ONQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR632ONQ [biosample_summary="Homo sapiens lower lobe of left lung tissue female adult (59 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (59 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF816ANC|/files/ENCFF816ANC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR632ONQ | float |
DNase-seq_ENCSR632ONQ |
DNase-seq ENCSR632ONQ [biosample_summary="Homo sapiens lower lobe of left lung tissue female adult (59 years)"]
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[0.0388, 11.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF977IJW.bed.gz | 1.56 MB | bd1c4a186de5b9b757207426648e0460 |
| ENCFF977IJW.bed.gz.dvc | 101.0 B | 51a914c2aa0a2b235159193d00fcede9 |
| ENCFF977IJW.tabix.bed.gz | 1.49 MB | 755b01a2c237ebae28557103aa7a6e3d |
| ENCFF977IJW.tabix.bed.gz.dvc | 107.0 B | cf5e0a5cc41deb4ca5503fab717bcdf5 |
| ENCFF977IJW.tabix.bed.gz.tbi | 251.87 KB | 39fac2dd45d115879018f76c1ad2bbc3 |
| ENCFF977IJW.tabix.bed.gz.tbi.dvc | 110.0 B | 64dd4314881f23d469d51ddd43d5339a |
| genomic_resource.yaml | 2.08 KB | f541bd0a1ad2577bba2c5cfb19c8c352 |
| genomic_resource_original.yaml | 1.97 KB | 024d5234708152525be6361de31715ba |
| statistics/ |