Resource

Id DNase-seq/ENCSR630XDNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR630XDN [biosample_summary="Homo sapiens T-cell female adult (18 years)"]
Description
Labels
  • accession: ENCSR630XDN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (18 years)
  • date_created: 2020-04-12T19:00:09.118774+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR630XDN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (18 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR630XDN float

DNase-seq_ENCSR630XDN

DNase-seq ENCSR630XDN [biosample_summary="Homo sapiens T-cell female adult (18 years)"]
HISTOGRAM FOR DNase-seq_ENCSR630XDN [0.156, 53.7]
n
6,845,050
mean
6.75
sd
7.86

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 68450500.21% 37117
chr1 691152 0.28% 3757
chr2 460839 0.19% 2505
chr3 361368 0.18% 1947
chr4 223372 0.12% 1214
chr5 299295 0.16% 1632
chr6 385219 0.23% 2100
chr7 320018 0.20% 1742
chr8 242701 0.17% 1308
chr9 273282 0.20% 1488
chr10 293775 0.22% 1602
chr11 352450 0.26% 1933
chr12 346552 0.26% 1866
chr13 136347 0.12% 725
chr14 243361 0.23% 1298
chr15 220540 0.22% 1207
chr16 298891 0.33% 1623
chr17 441048 0.53% 2409
chr18 99677 0.12% 540
chr19 513560 0.88% 2704
chr20 192542 0.30% 1076
chr21 85651 0.18% 460
chr22 174663 0.34% 973
chrX 188747 0.12% 1008
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 37117 3 620 184.42 180
global segment-length histogram

Files

Filename Size md5
ENCFF899YGN.bed.gz 416.15 KB 9cbb29c9d773429bf9ca68a3539153d3
ENCFF899YGN.tabix.bed.gz 378.16 KB 885d0be6de13aef4dd6f115a70de7946
ENCFF899YGN.tabix.bed.gz.tbi 189.34 KB 366a9c7d7f07f4ea077a57d75658feb2
genomic_resource.yaml 1.19 KB ed48275e8e0a514d1e255b467374d1cf
statistics/