DNase-seq_ENCSR629TMA
DNase-seq ENCSR629TMA [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (83 years)"]
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| Id: | DNase-seq/ENCSR629TMA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR629TMA [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (83 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (83 years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF614XTQ|/files/ENCFF614XTQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR629TMA | float |
DNase-seq_ENCSR629TMA |
DNase-seq ENCSR629TMA [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (83 years)"]
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[0.0288, 24.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF350RZI.bed.gz | 1.51 MB | 4da366e5ddb7577872a0a2ef57beb952 |
| ENCFF350RZI.bed.gz.dvc | 101.0 B | 0dd1c0ce48a9c59160bc48f94d4481f8 |
| ENCFF350RZI.tabix.bed.gz | 1.38 MB | 5ab14994cc91d5ab264fc0e12b420028 |
| ENCFF350RZI.tabix.bed.gz.dvc | 107.0 B | 856ff46e68cd7d91b5f73b297ac2fa05 |
| ENCFF350RZI.tabix.bed.gz.tbi | 530.62 KB | 484d7edce07c664a1a6a5cf28c223296 |
| ENCFF350RZI.tabix.bed.gz.tbi.dvc | 110.0 B | 4ba6a60d7d68c3919769192f1b8ce389 |
| genomic_resource.yaml | 2.24 KB | 5c7f64cf69cda07304648d00effd0b29 |
| genomic_resource_original.yaml | 2.09 KB | f7cb04883e2e23bb9e261b7dee3a220c |
| statistics/ |