Resource

Id DNase-seq/ENCSR628NEAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR628NEA [biosample_summary="Homo sapiens right lobe of liver tissue male adult (45 years)"]
Description
Labels
  • accession: ENCSR628NEA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001114/
  • biosample_summary: Homo sapiens right lobe of liver tissue male adult (45 years)
  • date_created: 2019-11-01T20:42:43.420459+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR628NEA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (45 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR628NEA float

DNase-seq_ENCSR628NEA

DNase-seq ENCSR628NEA [biosample_summary="Homo sapiens right lobe of liver tissue male adult (45 years)"]
HISTOGRAM FOR DNase-seq_ENCSR628NEA [0.0413, 18.5]
n
31,263,016
mean
1.21
sd
1.81

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 312630160.97% 154520
chr1 2866530 1.15% 14210
chr2 2563754 1.06% 12548
chr3 1583372 0.80% 8031
chr4 956935 0.50% 4808
chr5 1462505 0.81% 7303
chr6 1298263 0.76% 6654
chr7 1564039 0.98% 7787
chr8 1293396 0.89% 6443
chr9 1603013 1.16% 7747
chr10 1750779 1.31% 8593
chr11 1858992 1.38% 8918
chr12 1242434 0.93% 6290
chr13 560689 0.49% 2811
chr14 1105004 1.03% 5359
chr15 1260018 1.24% 6292
chr16 1286180 1.42% 6469
chr17 1792590 2.15% 8668
chr18 609368 0.76% 3067
chr19 1315858 2.24% 6376
chr20 1071276 1.66% 5232
chr21 504129 1.08% 2401
chr22 1099793 2.16% 5300
chrX 584713 0.37% 3039
chrY 29386 0.05% 174
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 154520 1 1360 202.32 184
global segment-length histogram

Files

Filename Size md5
ENCFF096WOZ.bed.gz 1.57 MB a6cf029895637304bc62b7eddee51c43
ENCFF096WOZ.tabix.bed.gz 1.47 MB 00fdcd625a269ed346d9c54fc79c4a25
ENCFF096WOZ.tabix.bed.gz.tbi 353.39 KB 3e456ca38c91a21022864155d035ebf3
genomic_resource.yaml 1.24 KB 5aba34d34b845ab13e68425c2024860b
statistics/