Resource

Id DNase-seq/ENCSR628IRMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR628IRM [biosample_summary="Homo sapiens T-cell male adult (21 years)"]
Description
Labels
  • accession: ENCSR628IRM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (21 years)
  • date_created: 2015-09-16T21:42:00.183421+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR628IRM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (21 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR628IRM float

DNase-seq_ENCSR628IRM

DNase-seq ENCSR628IRM [biosample_summary="Homo sapiens T-cell male adult (21 years)"]
HISTOGRAM FOR DNase-seq_ENCSR628IRM [0.0179, 85.8]
n
22,569,815
mean
3.48
sd
6.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 225698150.70% 114042
chr1 2203918 0.89% 11077
chr2 1705989 0.70% 8672
chr3 1262797 0.64% 6442
chr4 865490 0.46% 4450
chr5 1062880 0.59% 5406
chr6 1408428 0.82% 6991
chr7 1073326 0.67% 5562
chr8 885310 0.61% 4520
chr9 882450 0.64% 4496
chr10 1058190 0.79% 5348
chr11 1133796 0.84% 5713
chr12 1132946 0.85% 5730
chr13 527596 0.46% 2658
chr14 823718 0.77% 4098
chr15 739345 0.72% 3788
chr16 828563 0.92% 4187
chr17 1248178 1.50% 6189
chr18 415182 0.52% 2113
chr19 1164056 1.99% 5687
chr20 604328 0.94% 3049
chr21 280430 0.60% 1409
chr22 487791 0.96% 2490
chrX 734000 0.47% 3737
chrY 41108 0.07% 230
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 114042 1 900 197.91 180
global segment-length histogram

Files

Filename Size md5
ENCFF729DOV.bed.gz 1.25 MB 5af2b6d7c878918c1448c2538496ccd3
ENCFF729DOV.tabix.bed.gz 1.15 MB c8d3bdf2f2085e1d28a56f9a134141ff
ENCFF729DOV.tabix.bed.gz.tbi 385.13 KB d42fd59cf348b383259e59126dbcfc4d
genomic_resource.yaml 1.18 KB 8ac2b4af36e74ea20be29ae7646a78c7
statistics/