DNase-seq_ENCSR628GQE
DNase-seq ENCSR628GQE [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (88 years)"]
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| Id: | DNase-seq/ENCSR628GQE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR628GQE [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (88 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (88 years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF221QFW|/files/ENCFF221QFW/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR628GQE | float |
DNase-seq_ENCSR628GQE |
DNase-seq ENCSR628GQE [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (88 years)"]
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[0.0482, 10.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF971WVB.bed.gz | 1.26 MB | 1d042a010da3d76ea3e369abde679f1b |
| ENCFF971WVB.bed.gz.dvc | 101.0 B | 49b70abd03689a1e19bf740b2d35b19d |
| ENCFF971WVB.tabix.bed.gz | 1.18 MB | a1910b1a7e400240a73965074a3533d6 |
| ENCFF971WVB.tabix.bed.gz.dvc | 107.0 B | d9355122af73832e27a7ef2962895ec8 |
| ENCFF971WVB.tabix.bed.gz.tbi | 228.45 KB | ad1e2a523ebbe84087cae287a5c6ca12 |
| ENCFF971WVB.tabix.bed.gz.tbi.dvc | 110.0 B | df19f41d86dcd15d8762d030b736f087 |
| genomic_resource.yaml | 2.21 KB | 8c45ba44920f3d4a94045029370980c5 |
| genomic_resource_original.yaml | 2.07 KB | 521de80e7e0e76f472a0a3fb5d6da6ee |
| statistics/ |