DNase-seq_ENCSR627UDJ
DNase-seq ENCSR627UDJ [biosample_summary="Homo sapiens T-cell male adult (36 years)"]
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| Id: | DNase-seq/ENCSR627UDJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR627UDJ [biosample_summary="Homo sapiens T-cell male adult (36 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (36 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF838LVF|/files/ENCFF838LVF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.24. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF838LVF|/files/ENCFF838LVF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 32234237 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR627UDJ | float |
DNase-seq_ENCSR627UDJ |
DNase-seq ENCSR627UDJ [biosample_summary="Homo sapiens T-cell male adult (36 years)"]
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[0.281, 79.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF331AUI.bed.gz | 305.58 KB | ce13fce941455ce81b128bd843a410fa |
| ENCFF331AUI.bed.gz.dvc | 100.0 B | 3a680258f3c60d8a9faa42b507a12eec |
| ENCFF331AUI.tabix.bed.gz | 275.7 KB | 4ce7ac9125de42a1bb4f95ff14ce0005 |
| ENCFF331AUI.tabix.bed.gz.dvc | 106.0 B | 4a48a29dd763f9d2c9710b7bf0620154 |
| ENCFF331AUI.tabix.bed.gz.tbi | 169.18 KB | 81287b70b0b130c4e60bc50346772f9d |
| ENCFF331AUI.tabix.bed.gz.tbi.dvc | 110.0 B | d7fd8d6b0d2130cdc06f6058a1a6b432 |
| genomic_resource.yaml | 2.62 KB | 8aa85cecfc586510878db19804433981 |
| genomic_resource_original.yaml | 2.53 KB | 3aa1c00fce05e78c7fbe3854ece4b59d |
| statistics/ |