DNase-seq_ENCSR627NIF
DNase-seq ENCSR627NIF [biosample_summary="Homo sapiens lung tissue male embryo (54 days) and male embryo (58 days)"]
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| Id: | DNase-seq/ENCSR627NIF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR627NIF [biosample_summary="Homo sapiens lung tissue male embryo (54 days) and male embryo (58 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (58 days) male embryo (54 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN157TJR|/analyses/ENCAN157TJR/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF710GMU|/files/ENCFF710GMU/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF515DYE|/files/ENCFF515DYE/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR627NIF | float |
DNase-seq_ENCSR627NIF |
DNase-seq ENCSR627NIF [biosample_summary="Homo sapiens lung tissue male embryo (54 days) and male embryo (58 days)"]
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[6, 1.25e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF811RTH.bed.gz | 2.11 MB | 1e2c734f52ad43c3fad65190a8f6a881 |
| ENCFF811RTH.bed.gz.dvc | 101.0 B | ca98928fda7d2be48fb6a98f81376f19 |
| ENCFF811RTH.tabix.bed.gz | 1.82 MB | abe009196835e81a6307b6a3f8f86438 |
| ENCFF811RTH.tabix.bed.gz.dvc | 107.0 B | d764c71a6a5c67a471493f2f6713b661 |
| ENCFF811RTH.tabix.bed.gz.tbi | 699.02 KB | 29731ea6926e0225e1ad51a81b7183ab |
| ENCFF811RTH.tabix.bed.gz.tbi.dvc | 110.0 B | ec59a635b76a18e6ebf86714961a3b03 |
| genomic_resource.yaml | 3.09 KB | 10723142cb1841b320e8d72f4f886587 |
| genomic_resource_original.yaml | 2.98 KB | 635c864ed8e68e7b4b6c98ef8a9bd87d |
| statistics/ |