Resource

Id DNase-seq/ENCSR623PVBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR623PVB [biosample_summary="Homo sapiens T-helper 17 cell male adult (30 years)"]
Description
Labels
  • accession: ENCSR623PVB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000899/
  • biosample_summary: Homo sapiens T-helper 17 cell male adult (30 years)
  • date_created: 2020-03-30T21:22:40.299877+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR623PVB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (30 years)
  • status: released
  • submitter_comment: This dataset was originally submitted with 2 anisogenic replicates. The second replicate has been moved to ENCSR139KYP.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR623PVB float

DNase-seq_ENCSR623PVB

DNase-seq ENCSR623PVB [biosample_summary="Homo sapiens T-helper 17 cell male adult (30 years)"]
HISTOGRAM FOR DNase-seq_ENCSR623PVB [0.0566, 67.4]
n
8,724,945
mean
6.89
sd
9.34

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 87249450.27% 43690
chr1 883516 0.35% 4384
chr2 611810 0.25% 3066
chr3 432409 0.22% 2159
chr4 294833 0.16% 1468
chr5 376604 0.21% 1902
chr6 478532 0.28% 2364
chr7 409485 0.26% 2061
chr8 352096 0.24% 1813
chr9 352194 0.25% 1747
chr10 392014 0.29% 1943
chr11 475808 0.35% 2397
chr12 434053 0.33% 2167
chr13 160196 0.14% 794
chr14 316112 0.30% 1600
chr15 266844 0.26% 1371
chr16 349590 0.39% 1737
chr17 547171 0.66% 2703
chr18 126874 0.16% 649
chr19 602948 1.03% 2958
chr20 246650 0.38% 1269
chr21 108903 0.23% 551
chr22 244584 0.48% 1264
chrX 253087 0.16% 1282
chrY 8632 0.02% 41
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43690 1 840 199.7 200
global segment-length histogram

Files

Filename Size md5
ENCFF818QSP.bed.gz 496.74 KB 1c87f79b493a8d0e605e2ecc658e17b1
ENCFF818QSP.tabix.bed.gz 454.12 KB 653f1eeb80cbc0f88dd9b716728a0348
ENCFF818QSP.tabix.bed.gz.tbi 192.68 KB fb41da636d23489bb513aff61386892f
genomic_resource.yaml 1.33 KB 35f58fc43675769c6eb10d87bba493eb
statistics/