Resource
| Id | DNase-seq/ENCSR622CAH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR622CAH [biosample_summary="Homo sapiens muscle of leg tissue male embryo (127 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (127 days) output_type: peaks audit_warning: Alignment file {ENCFF056MLO|/files/ENCFF056MLO/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 25732125 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR622CAH | float |
DNase-seq_ENCSR622CAH |
DNase-seq ENCSR622CAH [biosample_summary="Homo sapiens muscle of leg tissue male embryo (127 days)"]
|
![]() |
[0.273, 49] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 10420097 | 0.32% | 58519 |
| chr1 | 942996 | 0.38% | 5240 |
| chr2 | 828391 | 0.34% | 4688 |
| chr3 | 668885 | 0.34% | 3785 |
| chr4 | 512160 | 0.27% | 2905 |
| chr5 | 585568 | 0.32% | 3356 |
| chr6 | 627309 | 0.37% | 3518 |
| chr7 | 508886 | 0.32% | 2900 |
| chr8 | 493793 | 0.34% | 2819 |
| chr9 | 450858 | 0.33% | 2502 |
| chr10 | 496902 | 0.37% | 2792 |
| chr11 | 555818 | 0.41% | 3116 |
| chr12 | 518455 | 0.39% | 2908 |
| chr13 | 277650 | 0.24% | 1601 |
| chr14 | 335218 | 0.31% | 1878 |
| chr15 | 339057 | 0.33% | 1910 |
| chr16 | 336908 | 0.37% | 1873 |
| chr17 | 432457 | 0.52% | 2391 |
| chr18 | 217816 | 0.27% | 1263 |
| chr19 | 425085 | 0.73% | 2179 |
| chr20 | 272617 | 0.42% | 1536 |
| chr21 | 128635 | 0.28% | 730 |
| chr22 | 180271 | 0.35% | 1021 |
| chrX | 277142 | 0.18% | 1564 |
| chrY | 7220 | 0.01% | 44 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 58519 | 3 | 800 | 178.06 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF570VFR.bed.gz | 626.81 KB | df4bf75310179e79fcdc17467e439e7d |
| ENCFF570VFR.tabix.bed.gz | 557.68 KB | 6ed70827313981970afab0949523d1d0 |
| ENCFF570VFR.tabix.bed.gz.tbi | 319.8 KB | f02cd7569e6fb8bee04ecdb166b1f93e |
| genomic_resource.yaml | 1.84 KB | 40354b01d8a144c6a4c00af8b0317be7 |
| statistics/ |
