Resource

Id DNase-seq/ENCSR621ENCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR621ENC [biosample_summary="Homo sapiens retina tissue embryo (74 days) and embryo (85 days)"]
Description
Labels
  • accession: ENCSR621ENC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000966/
  • biosample_summary: Homo sapiens retina tissue embryo (74 days) and embryo (85 days)
  • date_created: 2014-03-06T06:21:15.680212+00:00
  • date_released: 2016-05-09
  • doi: 10.17989/ENCSR621ENC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary: embryo (85 days) embryo (74 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR621ENC float

DNase-seq_ENCSR621ENC
DNase-seq ENCSR621ENC [biosample_summary="Homo sapiens retina tissue embryo (74 days) and embryo (85 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR621ENC [0.023, 16.1]
n
42,516,458
mean
1.16
sd
1.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 425164581.32% 164800
chr1 3897483 1.57% 14488
chr2 3340982 1.38% 13090
chr3 2435755 1.23% 9585
chr4 1985882 1.04% 7760
chr5 2365786 1.30% 9217
chr6 2393994 1.40% 9233
chr7 2194921 1.38% 8508
chr8 1889238 1.30% 7411
chr9 1896499 1.37% 7382
chr10 2135023 1.60% 8300
chr11 2288235 1.69% 8909
chr12 1979299 1.49% 7692
chr13 1106557 0.97% 4354
chr14 1417724 1.32% 5513
chr15 1377124 1.35% 5322
chr16 1578031 1.75% 6175
chr17 2038738 2.45% 7667
chr18 1047664 1.30% 4023
chr19 1485938 2.53% 5750
chr20 1256582 1.95% 4908
chr21 468606 1.00% 1803
chr22 820426 1.61% 3239
chrX 1115831 0.72% 4470
chrY 140 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 164800 1 1340 257.99 220
global segment-length histogram

Files

Filename Size md5
ENCFF853KWU.bed.gz 1.66 MB 3868b81a161b67ddfa78f321268d75cd
ENCFF853KWU.tabix.bed.gz 1.6 MB b1346b4bb1fd640406d5ba3742ddf9b8
ENCFF853KWU.tabix.bed.gz.tbi 499.88 KB c3fd12ee911f741187efa76637fd32e2
genomic_resource.yaml 1.27 KB d45c98359f58cb94ff896929d22f5e0b
statistics/