DNase-seq_ENCSR620WAR
DNase-seq ENCSR620WAR [biosample_summary="Homo sapiens SJSA1"]
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| Id: | DNase-seq/ENCSR620WAR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR620WAR [biosample_summary="Homo sapiens SJSA1"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Alignment file {ENCFF255DYN|/files/ENCFF255DYN/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 40698671 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF255DYN|/files/ENCFF255DYN/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR620WAR | float |
DNase-seq_ENCSR620WAR |
DNase-seq ENCSR620WAR [biosample_summary="Homo sapiens SJSA1"]
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[0.0274, 189] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF319DRN.bed.gz | 1.6 MB | b8f11b3a717a4ae8d0b6b7cc76506bcf |
| ENCFF319DRN.bed.gz.dvc | 101.0 B | 8cc839da23f7f8328a8901f80dfcadc8 |
| ENCFF319DRN.tabix.bed.gz | 1.51 MB | 42ab2756b72519df4c42487a55645cf2 |
| ENCFF319DRN.tabix.bed.gz.dvc | 107.0 B | 6bb47f0d97fefab92ba0a2f5efee718c |
| ENCFF319DRN.tabix.bed.gz.tbi | 480.95 KB | 371f373e40c4d531d98d4c8a9a087285 |
| ENCFF319DRN.tabix.bed.gz.tbi.dvc | 110.0 B | 46298efc147f978ae5dce70f497d2b69 |
| genomic_resource.yaml | 2.55 KB | 55d365001b2468dcc0e208d3242e3cc7 |
| genomic_resource_original.yaml | 2.48 KB | dfe1380a259d001e5f0c0edf3b8c561c |
| statistics/ |