DNase-seq_ENCSR620QNS
DNase-seq ENCSR620QNS [biosample_summary="Homo sapiens HAP-1"]
×
| Id: | DNase-seq/ENCSR620QNS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR620QNS [biosample_summary="Homo sapiens HAP-1"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF427IVB|/files/ENCFF427IVB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF303JZI|/files/ENCFF303JZI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR620QNS | float |
DNase-seq_ENCSR620QNS |
DNase-seq ENCSR620QNS [biosample_summary="Homo sapiens HAP-1"]
|
|
[0.0339, 119] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF933LZV.bed.gz | 1.37 MB | ee3154be9d2c4a4618b165ab79e3ddf7 |
| ENCFF933LZV.bed.gz.dvc | 101.0 B | 743cbf7c6d3309831ec203646af9630e |
| ENCFF933LZV.tabix.bed.gz | 1.26 MB | e3f8872b0962c93ec31353f773a92ae5 |
| ENCFF933LZV.tabix.bed.gz.dvc | 107.0 B | e82adf3994e7982346b45acd6ae5edd2 |
| ENCFF933LZV.tabix.bed.gz.tbi | 511.61 KB | 516b5f0153a8c5a9067c3928cdb579c9 |
| ENCFF933LZV.tabix.bed.gz.tbi.dvc | 110.0 B | 45f780e812e984c1390cb4cbe05a26fc |
| genomic_resource.yaml | 2.76 KB | d0e070afb63f82dc28b0b5fd663ef66c |
| genomic_resource_original.yaml | 2.7 KB | 8adbea3941b45a7e1b1950ca45247523 |
| statistics/ |