DNase-seq_ENCSR619BNL
DNase-seq ENCSR619BNL [biosample_summary="Homo sapiens muscle of arm tissue male embryo (97 days)"]
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| Id: | DNase-seq/ENCSR619BNL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR619BNL [biosample_summary="Homo sapiens muscle of arm tissue male embryo (97 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (97 days) output_type: peaks audit_warning: Alignment file {ENCFF161ZAX|/files/ENCFF161ZAX/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 33167191 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF161ZAX|/files/ENCFF161ZAX/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR619BNL | float |
DNase-seq_ENCSR619BNL |
DNase-seq ENCSR619BNL [biosample_summary="Homo sapiens muscle of arm tissue male embryo (97 days)"]
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[0.151, 8.08] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF387YOJ.bed.gz | 405.75 KB | a35e2c9c8cfe0834fc7ae519aec01796 |
| ENCFF387YOJ.bed.gz.dvc | 100.0 B | 66b9d71b9e8d18bbfa0f0d6c84c2287b |
| ENCFF387YOJ.tabix.bed.gz | 367.19 KB | 1bebce90fe4fc527808eb1e94eaede45 |
| ENCFF387YOJ.tabix.bed.gz.dvc | 106.0 B | 28b7e82e79894562261d383a0652f3bc |
| ENCFF387YOJ.tabix.bed.gz.tbi | 226.4 KB | 56ba563663ee646ff9e51b450e41dd3d |
| ENCFF387YOJ.tabix.bed.gz.tbi.dvc | 110.0 B | 26490ec7fbf480dec73885d7358e6663 |
| genomic_resource.yaml | 2.66 KB | 5957ad11f7bfd3890090e0b247f86dbe |
| genomic_resource_original.yaml | 2.56 KB | 6a3093290551907126d7bd6a233fa229 |
| statistics/ |