DNase-seq_ENCSR617SVO
DNase-seq ENCSR617SVO [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR617SVO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR617SVO [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF066YOO|/files/ENCFF066YOO/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR617SVO | float |
DNase-seq_ENCSR617SVO |
DNase-seq ENCSR617SVO [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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[0.0812, 10.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF293NTN.bed.gz | 638.49 KB | 6d5fe8ff75eb4b7400c6f11e8676547a |
| ENCFF293NTN.bed.gz.dvc | 100.0 B | a4a567e6b000b686bd8465896ab0e2eb |
| ENCFF293NTN.tabix.bed.gz | 581.24 KB | 9369a0bc6de91dbb22a3a815893d13a4 |
| ENCFF293NTN.tabix.bed.gz.dvc | 106.0 B | 756dcdbcb175de358914e29e2922e170 |
| ENCFF293NTN.tabix.bed.gz.tbi | 236.29 KB | 29e3bd80b110a85fdeda934fee24f4d4 |
| ENCFF293NTN.tabix.bed.gz.tbi.dvc | 110.0 B | abd328f9c6516ada41c6027b1a3b6e7e |
| genomic_resource.yaml | 2.3 KB | 0bfda3aec955c4e131f0c91ea82184fa |
| genomic_resource_original.yaml | 2.14 KB | 4b4d683ef498b707e2f8f8e4327ff072 |
| statistics/ |