DNase-seq_ENCSR617NTY
DNase-seq ENCSR617NTY [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"]
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| Id: | DNase-seq/ENCSR617NTY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR617NTY [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF620SNJ|/files/ENCFF620SNJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 47160300 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR617NTY | float |
DNase-seq_ENCSR617NTY |
DNase-seq ENCSR617NTY [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"]
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[0.234, 57.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF494PPF.bed.gz | 482.96 KB | 9dfaa1fe162ba9583cc3a0933841a900 |
| ENCFF494PPF.bed.gz.dvc | 100.0 B | 27c130e4755fb166f1e637b91f98b8fd |
| ENCFF494PPF.tabix.bed.gz | 439.61 KB | 9a5441a1609a0c10e04fab971377f82f |
| ENCFF494PPF.tabix.bed.gz.dvc | 106.0 B | 8a09818fab1763cc1b278f0405a80d99 |
| ENCFF494PPF.tabix.bed.gz.tbi | 214.1 KB | 036726f3a444265a42c5ba6abf06192f |
| ENCFF494PPF.tabix.bed.gz.tbi.dvc | 110.0 B | 6f5e0b4b91fc1f8ebcb37c88f6c8a338 |
| genomic_resource.yaml | 2.13 KB | 56e650588454965d12a06e125e112449 |
| genomic_resource_original.yaml | 1.98 KB | 78a7b2b1bd5bd19a2a43507cb7162d5d |
| statistics/ |