| Id: | DNase-seq/ENCSR616AEG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR616AEG [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF563PQP|/files/ENCFF563PQP/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR616AEG | float |
DNase-seq_ENCSR616AEG |
DNase-seq ENCSR616AEG [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours"]
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[0.178, 21.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF882JWI.bed.gz | 582.33 KB | 107b08b486ff66d9d74c76d270b0b5f2 |
| ENCFF882JWI.bed.gz.dvc | 100.0 B | 3b0c429fb7e9138310306d91e2df10e9 |
| ENCFF882JWI.tabix.bed.gz | 526.71 KB | 5c765f69404a0574b2d63469b85543bf |
| ENCFF882JWI.tabix.bed.gz.dvc | 106.0 B | 81a28e06d188a0b06580271b4771d482 |
| ENCFF882JWI.tabix.bed.gz.tbi | 270.24 KB | 7355abb584180357ab3ac1c8f3fe2498 |
| ENCFF882JWI.tabix.bed.gz.tbi.dvc | 110.0 B | 71c420a21c0fb80e55b2fc5be82ae64f |
| genomic_resource.yaml | 3.0 KB | 723cdb2114bffb0d99c091ae71ee3697 |
| genomic_resource_original.yaml | 2.71 KB | 539b59a71daf66a15ff4552fd55b7e3a |
| statistics/ |