| Id: | DNase-seq/ENCSR612IKQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR612IKQ [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; posterior cingulate gyrus tissue female adult (87 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (87 years) with Cognitive impairment, Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF176HYT|/files/ENCFF176HYT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR612IKQ | float |
DNase-seq_ENCSR612IKQ |
DNase-seq ENCSR612IKQ [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; posterior cingulate gyrus tissue female adult (87 years)"]
|
 |
[0.0561, 15.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF010XTH.bed.gz | 833.95 KB | 53114081e8e64f3a7edb89f737275b6a |
| ENCFF010XTH.bed.gz.dvc | 100.0 B | 6b023d7fe403d020966e78c2b39e80ea |
| ENCFF010XTH.tabix.bed.gz | 762.13 KB | e5213bc935319bc21bc4e4914d154f4f |
| ENCFF010XTH.tabix.bed.gz.dvc | 106.0 B | 397d6f48c880060a60fb8209a04a3610 |
| ENCFF010XTH.tabix.bed.gz.tbi | 261.47 KB | 816a17406de24e8de21112e0bcb39962 |
| ENCFF010XTH.tabix.bed.gz.tbi.dvc | 110.0 B | b184e8ddbce5a2b32d52a8713b636a9d |
| genomic_resource.yaml | 2.33 KB | 6d37c8f0beeeb58a7e55143fea51eaf3 |
| genomic_resource_original.yaml | 2.17 KB | 2e6306b15212e52c81d7021ad2b8c040 |
| statistics/ |