DNase-seq_ENCSR609DDQ
DNase-seq ENCSR609DDQ [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (34 years)"]
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| Id: | DNase-seq/ENCSR609DDQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR609DDQ [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (34 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (34 years) output_type: peaks audit_warning: Alignment file {ENCFF954LEK|/files/ENCFF954LEK/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 23852858 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF954LEK|/files/ENCFF954LEK/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR609DDQ | float |
DNase-seq_ENCSR609DDQ |
DNase-seq ENCSR609DDQ [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (34 years)"]
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[0.379, 15.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF566TYK.bed.gz | 288.69 KB | 102c5a3b765de086d58423a18ed6d14e |
| ENCFF566TYK.bed.gz.dvc | 100.0 B | 1115b022d44fa6121e357a1f712ba57d |
| ENCFF566TYK.tabix.bed.gz | 259.52 KB | d9c313920878e363f48b60714349cf50 |
| ENCFF566TYK.tabix.bed.gz.dvc | 106.0 B | 3de09b5e69b8965fee8037f28e865ab7 |
| ENCFF566TYK.tabix.bed.gz.tbi | 169.59 KB | 707d7a16f67c06680a6462b9477e382c |
| ENCFF566TYK.tabix.bed.gz.tbi.dvc | 110.0 B | 12ec76e2d08e38e457533d5b0f97dc29 |
| genomic_resource.yaml | 2.71 KB | 00c6bf176b8ae0564243704504d5dd8f |
| genomic_resource_original.yaml | 2.59 KB | 1f4d8c213d0d0450e09f0bbdb8a7e3e9 |
| statistics/ |