Resource

Id DNase-seq/ENCSR608NWPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR608NWP [biosample_summary="Homo sapiens right lobe of liver tissue female child (16 years)"]
Description
Labels
  • accession: ENCSR608NWP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001114/
  • biosample_summary: Homo sapiens right lobe of liver tissue female child (16 years)
  • date_created: 2019-11-01T20:42:43.469464+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR608NWP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female child (16 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR608NWP float

DNase-seq_ENCSR608NWP

DNase-seq ENCSR608NWP [biosample_summary="Homo sapiens right lobe of liver tissue female child (16 years)"]
HISTOGRAM FOR DNase-seq_ENCSR608NWP [0.0296, 30.5]
n
29,146,687
mean
1.43
sd
2.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 291466870.91% 145146
chr1 2483661 1.00% 12474
chr2 2125554 0.88% 10588
chr3 1370889 0.69% 6973
chr4 1071978 0.56% 5239
chr5 1167141 0.64% 5831
chr6 1003741 0.59% 5276
chr7 1587778 1.00% 7824
chr8 1193460 0.82% 5832
chr9 1467176 1.06% 7201
chr10 1398778 1.05% 6961
chr11 1888315 1.40% 9147
chr12 1195150 0.90% 6116
chr13 452511 0.40% 2285
chr14 996568 0.93% 4916
chr15 843854 0.83% 4360
chr16 1460425 1.62% 7363
chr17 1910633 2.29% 9453
chr18 408623 0.51% 2076
chr19 1480688 2.53% 7290
chr20 1087352 1.69% 5330
chr21 571458 1.22% 2756
chr22 1373933 2.70% 6648
chrX 604780 0.39% 3189
chrY 2241 <0.01% 18
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 145146 1 1361 200.81 180
global segment-length histogram

Files

Filename Size md5
ENCFF030GBB.bed.gz 1.46 MB 779cac302e8bc8f99899430498887a72
ENCFF030GBB.tabix.bed.gz 1.36 MB 78896f61e0c273b9f85c36b1d43a107e
ENCFF030GBB.tabix.bed.gz.tbi 306.78 KB 7f0e30951face8a9aa43e9a619689412
genomic_resource.yaml 1.25 KB 6b671d2fce7fc2c615f6cd9252870769
statistics/