Resource

Id DNase-seq/ENCSR607HILcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR607HIL [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours"]
Description
Labels
  • accession: ENCSR607HIL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours
  • date_created: 2020-04-18T22:21:50.629499+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR607HIL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR607HIL float

DNase-seq_ENCSR607HIL
DNase-seq ENCSR607HIL [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR607HIL [0.258, 34.3]
n
10,619,507
mean
4
sd
3.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 106195070.33% 55310
chr1 1058840 0.43% 5462
chr2 749861 0.31% 3875
chr3 604273 0.30% 3126
chr4 381493 0.20% 1999
chr5 479763 0.26% 2565
chr6 625199 0.37% 3254
chr7 484083 0.30% 2531
chr8 406869 0.28% 2141
chr9 433135 0.31% 2262
chr10 481215 0.36% 2522
chr11 528612 0.39% 2792
chr12 548131 0.41% 2809
chr13 215116 0.19% 1126
chr14 362157 0.34% 1878
chr15 353558 0.35% 1869
chr16 442684 0.49% 2298
chr17 618575 0.74% 3175
chr18 180613 0.22% 957
chr19 674509 1.15% 3414
chr20 296374 0.46% 1590
chr21 124440 0.27% 659
chr22 251215 0.49% 1322
chrX 318792 0.20% 1684
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55310 2 854 192 180
global segment-length histogram

Files

Filename Size md5
ENCFF830EOM.bed.gz 604.73 KB c15647609a771c6316ca55e408f5eac9
ENCFF830EOM.tabix.bed.gz 551.75 KB a2b175f38abe3592e15ce4498516e28f
ENCFF830EOM.tabix.bed.gz.tbi 261.64 KB 418b78cec5f25fc8a0cdc52a110c9a6e
genomic_resource.yaml 1.83 KB 6fae79072ac198886054c77daad361ca
statistics/