Resource

Id DNase-seq/ENCSR607EJVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR607EJV [biosample_summary="Homo sapiens effector memory CD4-positive, alpha-beta T cell male adult (24 years)"]
Description
Labels
  • accession: ENCSR607EJV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000905/
  • biosample_summary: Homo sapiens effector memory CD4-positive, alpha-beta T cell male adult (24 years)
  • date_created: 2020-05-11T15:41:53.113079+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR607EJV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (24 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR607EJV float

DNase-seq_ENCSR607EJV
DNase-seq ENCSR607EJV [biosample_summary="Homo sapiens effector memory CD4-positive, alpha-beta T cell male adult (24 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR607EJV [0.259, 115]
n
8,642,448
mean
10.2
sd
14.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 86424480.27% 46132
chr1 886725 0.36% 4714
chr2 584654 0.24% 3149
chr3 461043 0.23% 2462
chr4 291146 0.15% 1565
chr5 388819 0.21% 2079
chr6 505765 0.30% 2684
chr7 397314 0.25% 2117
chr8 311119 0.21% 1675
chr9 347480 0.25% 1860
chr10 380199 0.28% 2067
chr11 442659 0.33% 2376
chr12 439544 0.33% 2347
chr13 169818 0.15% 903
chr14 313237 0.29% 1654
chr15 273522 0.27% 1482
chr16 367194 0.41% 1950
chr17 534522 0.64% 2833
chr18 129090 0.16% 701
chr19 605172 1.03% 3147
chr20 239456 0.37% 1308
chr21 93727 0.20% 497
chr22 209297 0.41% 1116
chrX 262592 0.17% 1403
chrY 8354 0.01% 43
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46132 3 700 187.34 180
global segment-length histogram

Files

Filename Size md5
ENCFF158AZL.bed.gz 516.16 KB cbc61ae2650442f06ffba9184b23fced
ENCFF158AZL.tabix.bed.gz 471.43 KB f04fa71fdea25714b2773dc1fc61beb2
ENCFF158AZL.tabix.bed.gz.tbi 219.51 KB 7d2a91a856ed555353061ecf3ae7ce13
genomic_resource.yaml 1.31 KB 15f91d4d28d5c4885c536ae539e630ce
statistics/