DNase-seq_ENCSR606QDB
DNase-seq ENCSR606QDB [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (82 years)"]
×
| Id: | DNase-seq/ENCSR606QDB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR606QDB [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (82 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (82 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF727AGR|/files/ENCFF727AGR/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR606QDB | float |
DNase-seq_ENCSR606QDB |
DNase-seq ENCSR606QDB [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (82 years)"]
|
|
[0.0541, 11.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF521CSC.bed.gz | 693.74 KB | fc873ab742aa3d9e18b5ef39aff06b50 |
| ENCFF521CSC.bed.gz.dvc | 100.0 B | 2fd0986b5309a1679a37c65ee14b6865 |
| ENCFF521CSC.tabix.bed.gz | 631.15 KB | 2a3eaae55896c6188556b5093e3bbbd6 |
| ENCFF521CSC.tabix.bed.gz.dvc | 106.0 B | 83995f6214ab25c864c82ab71f92c31a |
| ENCFF521CSC.tabix.bed.gz.tbi | 277.87 KB | f33c50a19afc9f424a322ed78705140a |
| ENCFF521CSC.tabix.bed.gz.tbi.dvc | 110.0 B | 4bc9ab392c99d938f0c00b1b4489dca5 |
| genomic_resource.yaml | 2.08 KB | e397363a47853d5cbba01faedba81a89 |
| genomic_resource_original.yaml | 1.97 KB | df337d488527983f108494c3180695bb |
| statistics/ |