| Id: | DNase-seq/ENCSR605SQL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR605SQL [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF056GCU|/files/ENCFF056GCU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 39692886 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR605SQL | float |
DNase-seq_ENCSR605SQL |
DNase-seq ENCSR605SQL [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours"]
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[0.227, 84.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF776NTG.bed.gz | 516.26 KB | 9f36d0b5e56ec905f3a978625144acbf |
| ENCFF776NTG.bed.gz.dvc | 100.0 B | aa5ad7c0b91d4f42cf48e1aac0da97ba |
| ENCFF776NTG.tabix.bed.gz | 469.3 KB | 49eb42f2c64a3d6dbac8d55f3325f12a |
| ENCFF776NTG.tabix.bed.gz.dvc | 106.0 B | 86450c904c12d324d59a2095f90edcb7 |
| ENCFF776NTG.tabix.bed.gz.tbi | 221.95 KB | 6d5574bc44cf61a87292883915e3345b |
| ENCFF776NTG.tabix.bed.gz.tbi.dvc | 110.0 B | becbd2e15d79bbf5b770fd1285e33335 |
| genomic_resource.yaml | 2.64 KB | e958ce062c6c7079d8d7d6495cc19fb6 |
| genomic_resource_original.yaml | 2.38 KB | b47f8e62e8f0638d1356d1231bdead9c |
| statistics/ |