Resource

Id DNase-seq/ENCSR605SQLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR605SQL [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours"]
Description
Labels
  • accession: ENCSR605SQL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours
  • date_created: 2020-04-19T18:36:53.248833+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR605SQL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR605SQL float

DNase-seq_ENCSR605SQL
DNase-seq ENCSR605SQL [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR605SQL [0.227, 84.7]
n
8,674,909
mean
8.18
sd
9.15

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 86749090.27% 46538
chr1 882389 0.35% 4710
chr2 584524 0.24% 3146
chr3 460781 0.23% 2449
chr4 298749 0.16% 1593
chr5 380807 0.21% 2052
chr6 501266 0.29% 2653
chr7 389701 0.24% 2097
chr8 323079 0.22% 1761
chr9 362954 0.26% 1951
chr10 389266 0.29% 2077
chr11 441864 0.33% 2380
chr12 451903 0.34% 2396
chr13 171682 0.15% 916
chr14 296679 0.28% 1584
chr15 280866 0.28% 1539
chr16 366110 0.41% 1969
chr17 530376 0.64% 2835
chr18 138309 0.17% 737
chr19 603036 1.03% 3195
chr20 244610 0.38% 1354
chr21 101538 0.22% 561
chr22 211775 0.42% 1164
chrX 254625 0.16% 1378
chrY 8020 0.01% 41
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46538 2 860 186.4 180
global segment-length histogram

Files

Filename Size md5
ENCFF776NTG.bed.gz 516.26 KB 9f36d0b5e56ec905f3a978625144acbf
ENCFF776NTG.tabix.bed.gz 469.3 KB 49eb42f2c64a3d6dbac8d55f3325f12a
ENCFF776NTG.tabix.bed.gz.tbi 221.95 KB 6d5574bc44cf61a87292883915e3345b
genomic_resource.yaml 2.64 KB e958ce062c6c7079d8d7d6495cc19fb6
statistics/