Resource

Id DNase-seq/ENCSR600RAAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR600RAA [biosample_summary="Homo sapiens left kidney tissue male embryo (87 days)"]
Description
Labels
  • accession: ENCSR600RAA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004538/
  • biosample_summary: Homo sapiens left kidney tissue male embryo (87 days)
  • date_created: 2015-09-16T21:43:04.872846+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR600RAA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (87 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR600RAA float

DNase-seq_ENCSR600RAA
DNase-seq ENCSR600RAA [biosample_summary="Homo sapiens left kidney tissue male embryo (87 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR600RAA [0.156, 19.2]
n
14,069,825
mean
2.32
sd
2.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 140698250.44% 72668
chr1 1271527 0.51% 6530
chr2 1131917 0.47% 5835
chr3 917579 0.46% 4743
chr4 733026 0.39% 3750
chr5 774302 0.43% 3977
chr6 844488 0.49% 4342
chr7 739389 0.46% 3840
chr8 641157 0.44% 3309
chr9 564725 0.41% 2962
chr10 703281 0.53% 3626
chr11 705974 0.52% 3680
chr12 703908 0.53% 3614
chr13 394924 0.35% 2042
chr14 458168 0.43% 2358
chr15 480490 0.47% 2474
chr16 451427 0.50% 2371
chr17 573552 0.69% 2969
chr18 323425 0.40% 1666
chr19 571113 0.97% 2826
chr20 349194 0.54% 1853
chr21 140902 0.30% 733
chr22 237262 0.47% 1262
chrX 344525 0.22% 1845
chrY 13570 0.02% 61
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 72668 1 1040 193.62 180
global segment-length histogram

Files

Filename Size md5
ENCFF991MBB.bed.gz 763.41 KB aac53d1afa6b9f67c858bf4b6d4ea050
ENCFF991MBB.tabix.bed.gz 691.63 KB 483c280002514a6f83341ceeaf119076
ENCFF991MBB.tabix.bed.gz.tbi 352.25 KB c0412f861c9cafc67ed60c2e01bdf315
genomic_resource.yaml 1.83 KB 25a2ca6200f040d7ab00d745cff7bd5b
statistics/