DNase-seq_ENCSR599JZA
DNase-seq ENCSR599JZA [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (86 years)"]
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| Id: | DNase-seq/ENCSR599JZA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR599JZA [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (86 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (86 years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF928JSC|/files/ENCFF928JSC/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR599JZA | float |
DNase-seq_ENCSR599JZA |
DNase-seq ENCSR599JZA [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (86 years)"]
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[0.0534, 12.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF235PNM.bed.gz | 715.49 KB | 6b5d6e821dbe9be619f0877082d2b531 |
| ENCFF235PNM.bed.gz.dvc | 100.0 B | be570e146bc96f138145ce0713ccd113 |
| ENCFF235PNM.tabix.bed.gz | 656.39 KB | be856b9afb61bee70fbf810e28b5ccd8 |
| ENCFF235PNM.tabix.bed.gz.dvc | 106.0 B | b6c7c41e7b6d16c9920a56edf9799822 |
| ENCFF235PNM.tabix.bed.gz.tbi | 232.36 KB | 202897eeb2de487deb50b844ba67a2ec |
| ENCFF235PNM.tabix.bed.gz.tbi.dvc | 110.0 B | 5fb47790c4d4f0a6d8ffff797f8c7698 |
| genomic_resource.yaml | 2.21 KB | f93d3e7ab93c84920ceb2f2d98b630b3 |
| genomic_resource_original.yaml | 2.07 KB | 62735b8a4e456ed15616f8731c1998a7 |
| statistics/ |