DNase-seq_ENCSR598RRF
DNase-seq ENCSR598RRF [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (87 years)"]
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| Id: | DNase-seq/ENCSR598RRF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR598RRF [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (87 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (87 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF187FTX|/files/ENCFF187FTX/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR598RRF | float |
DNase-seq_ENCSR598RRF |
DNase-seq ENCSR598RRF [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (87 years)"]
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[0.0453, 15.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF947BGT.bed.gz | 1012.28 KB | 29f403ee2031e96423aeb7b505099310 |
| ENCFF947BGT.bed.gz.dvc | 101.0 B | 58f99b64d46a464591a002288da5ed28 |
| ENCFF947BGT.tabix.bed.gz | 925.85 KB | d4f9c60f688697ae03ce90af90086f7e |
| ENCFF947BGT.tabix.bed.gz.dvc | 106.0 B | 9c82cf0a109c9925222180c3d8f7d8e0 |
| ENCFF947BGT.tabix.bed.gz.tbi | 408.98 KB | 213eb7557d843303daa48517a2ea35a3 |
| ENCFF947BGT.tabix.bed.gz.tbi.dvc | 110.0 B | 84d76e314b79673dc7e8e85d064aeb6c |
| genomic_resource.yaml | 2.07 KB | 7c74413f3c60f780015222d682e7f4e6 |
| genomic_resource_original.yaml | 1.96 KB | ae2cc15177fdad6a34bc8bc94c1fc052 |
| statistics/ |