Resource
| Id | DNase-seq/ENCSR597UIG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR597UIG [biosample_summary="Homo sapiens spleen tissue female adult (41 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF549DYB|/files/ENCFF549DYB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR597UIG | float |
DNase-seq_ENCSR597UIG |
DNase-seq ENCSR597UIG [biosample_summary="Homo sapiens spleen tissue female adult (41 years)"]
|
 |
[0.0548, 17.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 25102718 | 0.78% | 121218 |
| chr1 | 2175501 | 0.87% | 10515 |
| chr2 | 2256226 | 0.93% | 10811 |
| chr3 | 1258608 | 0.63% | 5985 |
| chr4 | 697381 | 0.37% | 3233 |
| chr5 | 1117711 | 0.62% | 5390 |
| chr6 | 1042771 | 0.61% | 5071 |
| chr7 | 1348973 | 0.85% | 6603 |
| chr8 | 1083394 | 0.75% | 5192 |
| chr9 | 1139032 | 0.82% | 5588 |
| chr10 | 1533068 | 1.15% | 7394 |
| chr11 | 1393051 | 1.03% | 6646 |
| chr12 | 1014771 | 0.76% | 5012 |
| chr13 | 440868 | 0.39% | 2100 |
| chr14 | 876537 | 0.82% | 4231 |
| chr15 | 895402 | 0.88% | 4326 |
| chr16 | 1010348 | 1.12% | 4986 |
| chr17 | 1398659 | 1.68% | 6921 |
| chr18 | 403493 | 0.50% | 1891 |
| chr19 | 1128121 | 1.92% | 5382 |
| chr20 | 900218 | 1.40% | 4386 |
| chr21 | 442376 | 0.95% | 2091 |
| chr22 | 1021202 | 2.01% | 4891 |
| chrX | 523977 | 0.34% | 2565 |
| chrY | 1030 | <0.01% | 8 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 121218 | 1 | 1280 | 207.09 | 192 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF891FHW.bed.gz | 1.19 MB | 36196892436b62cfb1f7379c9adc9570 |
| ENCFF891FHW.tabix.bed.gz | 1.12 MB | 78831475b5fdfce647a947636c4a5e5a |
| ENCFF891FHW.tabix.bed.gz.tbi | 238.4 KB | 2442d041686cfbc260aa36e598d7a2c9 |
| genomic_resource.yaml | 2.03 KB | 376f77b03fed4976c1e9a9577a725663 |
| statistics/ |