DNase-seq_ENCSR597UIG
DNase-seq ENCSR597UIG [biosample_summary="Homo sapiens spleen tissue female adult (41 years)"]
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| Id: | DNase-seq/ENCSR597UIG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR597UIG [biosample_summary="Homo sapiens spleen tissue female adult (41 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF549DYB|/files/ENCFF549DYB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR597UIG | float |
DNase-seq_ENCSR597UIG |
DNase-seq ENCSR597UIG [biosample_summary="Homo sapiens spleen tissue female adult (41 years)"]
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[0.0548, 17.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF891FHW.bed.gz | 1.19 MB | 36196892436b62cfb1f7379c9adc9570 |
| ENCFF891FHW.bed.gz.dvc | 101.0 B | e969274ce190c6ce68776e02efbac5af |
| ENCFF891FHW.tabix.bed.gz | 1.12 MB | 78831475b5fdfce647a947636c4a5e5a |
| ENCFF891FHW.tabix.bed.gz.dvc | 107.0 B | b512b195ed5c6b89c264410aee0d8074 |
| ENCFF891FHW.tabix.bed.gz.tbi | 238.4 KB | 2442d041686cfbc260aa36e598d7a2c9 |
| ENCFF891FHW.tabix.bed.gz.tbi.dvc | 110.0 B | f802465c8a0e00fb9511f42907f52feb |
| genomic_resource.yaml | 2.03 KB | 376f77b03fed4976c1e9a9577a725663 |
| genomic_resource_original.yaml | 1.93 KB | 555f920e3c9e5d1c81c7717b708888fb |
| statistics/ |