DNase-seq_ENCSR597NVK
DNase-seq ENCSR597NVK [biosample_summary="Homo sapiens adrenal gland tissue female adult (53 years)"]
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| Id: | DNase-seq/ENCSR597NVK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR597NVK [biosample_summary="Homo sapiens adrenal gland tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN402UTV|/analyses/ENCAN402UTV/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF961UNE|/files/ENCFF961UNE/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR597NVK | float |
DNase-seq_ENCSR597NVK |
DNase-seq ENCSR597NVK [biosample_summary="Homo sapiens adrenal gland tissue female adult (53 years)"]
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[1, 2.89e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF977OWF.bed.gz | 3.42 MB | a95c4defaae17cd741fde8ed630d46b3 |
| ENCFF977OWF.bed.gz.dvc | 101.0 B | a9a680530ab29b26b3f330ef46591b3a |
| ENCFF977OWF.tabix.bed.gz | 2.94 MB | e519cef664c5a4a68099480b6dfc2066 |
| ENCFF977OWF.tabix.bed.gz.dvc | 107.0 B | 13f6c00fecff02c40bbc95e65fb14428 |
| ENCFF977OWF.tabix.bed.gz.tbi | 519.81 KB | 2842c402284eaf5130eecc6a2ecf67a6 |
| ENCFF977OWF.tabix.bed.gz.tbi.dvc | 110.0 B | 68f7c079e3840ac39a09e7eaf152f2c8 |
| genomic_resource.yaml | 2.21 KB | 477ab9af3946dd3dccbe9695650eb2cb |
| genomic_resource_original.yaml | 2.1 KB | 49fa6737937ac8215eafabbeeeff5c9a |
| statistics/ |