Resource
| Id | DNase-seq/ENCSR597NVK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR597NVK [biosample_summary="Homo sapiens adrenal gland tissue female adult (53 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN402UTV|/analyses/ENCAN402UTV/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF961UNE|/files/ENCFF961UNE/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR597NVK | float |
DNase-seq_ENCSR597NVK |
DNase-seq ENCSR597NVK [biosample_summary="Homo sapiens adrenal gland tissue female adult (53 years)"]
|
 |
[1, 2.89e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 57135545 | 1.78% | 379118 |
| chr1 | 5199909 | 2.09% | 34508 |
| chr2 | 5366995 | 2.22% | 35594 |
| chr3 | 3421610 | 1.73% | 22702 |
| chr4 | 1922112 | 1.01% | 12735 |
| chr5 | 3155805 | 1.74% | 20936 |
| chr6 | 2900620 | 1.70% | 19258 |
| chr7 | 2774272 | 1.74% | 18422 |
| chr8 | 2770587 | 1.91% | 18392 |
| chr9 | 2506630 | 1.81% | 16637 |
| chr10 | 3469097 | 2.59% | 23014 |
| chr11 | 3096679 | 2.29% | 20566 |
| chr12 | 2294547 | 1.72% | 15231 |
| chr13 | 1425253 | 1.25% | 9452 |
| chr14 | 1816217 | 1.70% | 12061 |
| chr15 | 2127496 | 2.09% | 14107 |
| chr16 | 2043033 | 2.26% | 13548 |
| chr17 | 2140272 | 2.57% | 14211 |
| chr18 | 1510284 | 1.88% | 10020 |
| chr19 | 1606153 | 2.74% | 10661 |
| chr20 | 1928310 | 2.99% | 12797 |
| chr21 | 841767 | 1.80% | 5582 |
| chr22 | 1180868 | 2.32% | 7833 |
| chrX | 1601479 | 1.03% | 10614 |
| chrY | 35550 | 0.06% | 237 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 379118 | 4 | 550 | 150.71 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF977OWF.bed.gz | 3.42 MB | a95c4defaae17cd741fde8ed630d46b3 |
| ENCFF977OWF.tabix.bed.gz | 2.94 MB | e519cef664c5a4a68099480b6dfc2066 |
| ENCFF977OWF.tabix.bed.gz.tbi | 519.81 KB | 2842c402284eaf5130eecc6a2ecf67a6 |
| genomic_resource.yaml | 2.21 KB | 477ab9af3946dd3dccbe9695650eb2cb |
| statistics/ |