Resource

Id DNase-seq/ENCSR595THLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR595THL [biosample_summary="Homo sapiens activated T-helper 1 cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"]
Description
Labels
  • accession: ENCSR595THL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000633/
  • biosample_summary: Homo sapiens activated T-helper 1 cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours
  • date_created: 2020-04-16T03:32:07.569890+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR595THL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours
  • status: released
  • submitter_comment: The biosample ontology on this experiment was previously CL:0000545 (T-helper 1 cell). It has been updated to NTR:0000633 (activated T-helper 1 cell) on 11/04/21. An additional treatment 50 U/mL Interleukin-2 (UniProtKB:P60568) for 16 hours was also added to the biosample.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR595THL float

DNase-seq_ENCSR595THL
DNase-seq ENCSR595THL [biosample_summary="Homo sapiens activated T-helper 1 cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR595THL [0.21, 45.7]
n
7,751,934
mean
6.35
sd
6.73

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 77519340.24% 39742
chr1 796679 0.32% 4074
chr2 526314 0.22% 2684
chr3 417037 0.21% 2141
chr4 258871 0.14% 1303
chr5 336715 0.19% 1727
chr6 459660 0.27% 2345
chr7 345542 0.22% 1781
chr8 283285 0.20% 1468
chr9 311704 0.23% 1599
chr10 335854 0.25% 1732
chr11 389919 0.29% 2023
chr12 402234 0.30% 2058
chr13 146330 0.13% 739
chr14 281505 0.26% 1412
chr15 257462 0.25% 1351
chr16 332044 0.37% 1700
chr17 483309 0.58% 2480
chr18 116151 0.14% 604
chr19 536758 0.92% 2715
chr20 219567 0.34% 1150
chr21 89458 0.19% 465
chr22 192217 0.38% 1004
chrX 233319 0.15% 1187
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39742 1 800 195.06 180
global segment-length histogram

Files

Filename Size md5
ENCFF073FBQ.bed.gz 441.42 KB 898d3132c227e9584c9ec116b39a4496
ENCFF073FBQ.tabix.bed.gz 400.83 KB 593401602bca0a52031205049af16e25
ENCFF073FBQ.tabix.bed.gz.tbi 198.04 KB 42028bb5cb286dacbbba6ddf8b19d965
genomic_resource.yaml 2.64 KB 711d78e89c5993048470b9f2918fa5cc
statistics/