Resource

Id DNase-seq/ENCSR595CSHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR595CSH [biosample_summary="Homo sapiens brain tissue embryo (56 days) and male embryo (58 days)"]
Description
Labels
  • accession: ENCSR595CSH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000955/
  • biosample_summary: Homo sapiens brain tissue embryo (56 days) and male embryo (58 days)
  • date_created: 2014-06-20T23:11:03.555821+00:00
  • date_released: 2015-08-31
  • doi: 10.17989/ENCSR595CSH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary: embryo (56 days) male embryo (58 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR595CSH float

DNase-seq_ENCSR595CSH
DNase-seq ENCSR595CSH [biosample_summary="Homo sapiens brain tissue embryo (56 days) and male embryo (58 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR595CSH [0.0358, 36.4]
n
46,410,003
mean
1.47
sd
2.85

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 464100031.44% 212085
chr1 4044245 1.62% 18179
chr2 3885298 1.60% 17770
chr3 2996205 1.51% 13823
chr4 2456597 1.29% 11352
chr5 2775972 1.53% 12534
chr6 2780637 1.63% 12598
chr7 2519528 1.58% 11457
chr8 2239870 1.54% 10227
chr9 1948937 1.41% 8914
chr10 2290583 1.71% 10376
chr11 2289508 1.69% 10502
chr12 2206646 1.66% 10089
chr13 1417271 1.24% 6438
chr14 1508443 1.41% 6763
chr15 1455690 1.43% 6682
chr16 1544625 1.71% 7108
chr17 1746942 2.10% 7963
chr18 1201603 1.50% 5512
chr19 1221228 2.08% 5674
chr20 1210105 1.88% 5541
chr21 517579 1.11% 2420
chr22 787245 1.55% 3663
chrX 1326789 0.85% 6306
chrY 38457 0.07% 194
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 212085 1 1260 218.83 200
global segment-length histogram

Files

Filename Size md5
ENCFF876GOT.bed.gz 2.25 MB 5d3d453684ef683b5b863e0cabe24507
ENCFF876GOT.tabix.bed.gz 2.07 MB fd02e0cd8243b2719999970dc9f51590
ENCFF876GOT.tabix.bed.gz.tbi 691.46 KB 11ae6cc27f1f4a3e8b10ce620a67a2be
genomic_resource.yaml 1.29 KB 8864a65a937db369c6e6c6494c42d927
statistics/