Resource

Id DNase-seq/ENCSR594OWAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR594OWA [biosample_summary="Homo sapiens small intestine tissue male embryo (91 days)"]
Description
Labels
  • accession: ENCSR594OWA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002108/
  • biosample_summary: Homo sapiens small intestine tissue male embryo (91 days)
  • date_created: 2015-09-16T21:42:48.086012+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR594OWA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (91 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR594OWA float

DNase-seq_ENCSR594OWA

DNase-seq ENCSR594OWA [biosample_summary="Homo sapiens small intestine tissue male embryo (91 days)"]
HISTOGRAM FOR DNase-seq_ENCSR594OWA [0.319, 17.7]
n
8,252,712
mean
3.06
sd
2.16

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 82527120.26% 47911
chr1 778738 0.31% 4510
chr2 651972 0.27% 3838
chr3 554203 0.28% 3219
chr4 442264 0.23% 2583
chr5 451420 0.25% 2629
chr6 507177 0.30% 2957
chr7 415052 0.26% 2416
chr8 350297 0.24% 2066
chr9 331467 0.24% 1934
chr10 372966 0.28% 2192
chr11 422112 0.31% 2466
chr12 433343 0.33% 2505
chr13 219416 0.19% 1270
chr14 271140 0.25% 1584
chr15 247735 0.24% 1466
chr16 279315 0.31% 1602
chr17 344495 0.41% 1968
chr18 201322 0.25% 1168
chr19 349757 0.60% 1844
chr20 206160 0.32% 1231
chr21 88085 0.19% 513
chr22 141662 0.28% 823
chrX 184912 0.12% 1087
chrY 7702 0.01% 40
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47911 6 720 172.25 170
global segment-length histogram

Files

Filename Size md5
ENCFF478NDZ.bed.gz 508.9 KB 2e27acb15abcc5da3293f9d5454c710d
ENCFF478NDZ.tabix.bed.gz 446.12 KB e7ddf367003d1be2802f0e81e16bcd5c
ENCFF478NDZ.tabix.bed.gz.tbi 288.23 KB 41ad45b7b967e39bb6484c1a487b626a
genomic_resource.yaml 1.84 KB 1eb7b3328f2d41543bd8049325c0a52c
statistics/