Resource

Id DNase-seq/ENCSR593OUEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR593OUE [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"]
Description
Labels
  • accession: ENCSR593OUE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000497/
  • biosample_summary: Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours
  • date_created: 2020-04-16T03:32:08.579818+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR593OUE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours
  • status: released
  • submitter_comment: The biosample ontology on this experiment was previously NTR:0000496 (CD4-positive naive resting alpha-beta T cell). It has been updated to NTR:0000497 (activated CD4 positive, naive alpha-beta T cell) on 11/04/21.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR593OUE float

DNase-seq_ENCSR593OUE
DNase-seq ENCSR593OUE [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR593OUE [0.0698, 73.6]
n
12,789,304
mean
5.34
sd
8.29

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 127893040.40% 68696
chr1 1227468 0.49% 6582
chr2 921932 0.38% 4964
chr3 655000 0.33% 3518
chr4 471574 0.25% 2511
chr5 568794 0.31% 3060
chr6 695671 0.41% 3748
chr7 608720 0.38% 3243
chr8 557421 0.38% 2973
chr9 529207 0.38% 2848
chr10 556958 0.42% 2990
chr11 675667 0.50% 3627
chr12 630150 0.47% 3336
chr13 237388 0.21% 1266
chr14 479997 0.45% 2597
chr15 395123 0.39% 2164
chr16 489587 0.54% 2644
chr17 783294 0.94% 4198
chr18 199983 0.25% 1083
chr19 760245 1.30% 4032
chr20 384632 0.60% 2070
chr21 179310 0.38% 992
chr22 371350 0.73% 2017
chrX 394988 0.25% 2147
chrY 14845 0.03% 86
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 68696 2 1040 186.17 180
global segment-length histogram

Files

Filename Size md5
ENCFF650TJG.bed.gz 773.53 KB f641655e9cd8773950d50736f7eec1dc
ENCFF650TJG.tabix.bed.gz 705.95 KB 7f29609dd83da62a6aeb94d10621d19e
ENCFF650TJG.tabix.bed.gz.tbi 258.72 KB d7397ba8e1cd13d206e08013c8f8762b
genomic_resource.yaml 2.02 KB 207818aa139bdb2f8a1e11f93685521d
statistics/