DNase-seq_ENCSR593LTJ
DNase-seq ENCSR593LTJ [biosample_summary="Homo sapiens trophoblast cell embryo (17 weeks) and embryo (18 weeks)"]
×
| Id: | DNase-seq/ENCSR593LTJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR593LTJ [biosample_summary="Homo sapiens trophoblast cell embryo (17 weeks) and embryo (18 weeks)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: embryo (17 weeks) embryo (18 weeks) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF610MXQ|/files/ENCFF610MXQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR593LTJ | float |
DNase-seq_ENCSR593LTJ |
DNase-seq ENCSR593LTJ [biosample_summary="Homo sapiens trophoblast cell embryo (17 weeks) and embryo (18 weeks)"]
|
|
[0.0106, 11.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF612USL.bed.gz | 3.34 MB | 2a7d03db1a4ca02898a19363826853ee |
| ENCFF612USL.bed.gz.dvc | 101.0 B | 49a4efa95e61d37aa257c8223e5a9cef |
| ENCFF612USL.tabix.bed.gz | 3.06 MB | 263139f181e235e6a15d6042e490e5e4 |
| ENCFF612USL.tabix.bed.gz.dvc | 107.0 B | 17ed080b8e697e176c25987dd120a95f |
| ENCFF612USL.tabix.bed.gz.tbi | 720.23 KB | 7a6d79a491191a7626ce24b4f9e944d4 |
| ENCFF612USL.tabix.bed.gz.tbi.dvc | 110.0 B | 9f3fc7ad22c2b5c159b1414e22d842d7 |
| genomic_resource.yaml | 2.11 KB | fa924eb42e6e2e410955316fe8bdda62 |
| genomic_resource_original.yaml | 2.0 KB | 5e3efb4620195ffd290edea0e93ec207 |
| statistics/ |