DNase-seq_ENCSR590EFT
DNase-seq ENCSR590EFT [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR590EFT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR590EFT [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF265UWQ|/files/ENCFF265UWQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR590EFT | float |
DNase-seq_ENCSR590EFT |
DNase-seq ENCSR590EFT [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.0708, 11.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF006ZAY.bed.gz | 515.71 KB | 3c4ed23ae623ebfa0cb62a1f35c0d4a9 |
| ENCFF006ZAY.bed.gz.dvc | 100.0 B | b2813e0f00612f308089aede60d6dc09 |
| ENCFF006ZAY.tabix.bed.gz | 477.84 KB | 7d086c1f2a6945b154c30d23d7b4297d |
| ENCFF006ZAY.tabix.bed.gz.dvc | 106.0 B | 2985a27aef3478d127677cb80e02b89c |
| ENCFF006ZAY.tabix.bed.gz.tbi | 162.5 KB | df143430a4d5babfc1a502b99d710617 |
| ENCFF006ZAY.tabix.bed.gz.tbi.dvc | 110.0 B | d5bd309db5ea3900e8b85334573a4bf1 |
| genomic_resource.yaml | 2.13 KB | b936d1d8bfa4e110284c8b9f7f37eb78 |
| genomic_resource_original.yaml | 2.01 KB | 68bfbfd33b476aec19cd773543c3f916 |
| statistics/ |