Resource

Id DNase-seq/ENCSR587HPRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR587HPR [biosample_summary="Homo sapiens lung tissue male embryo (82 days)"]
Description
Labels
  • accession: ENCSR587HPR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002048/
  • biosample_summary: Homo sapiens lung tissue male embryo (82 days)
  • date_created: 2015-09-16T21:42:44.159466+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR587HPR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (82 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR587HPR float

DNase-seq_ENCSR587HPR
DNase-seq ENCSR587HPR [biosample_summary="Homo sapiens lung tissue male embryo (82 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR587HPR [3, 2.21e+03]
n
13,872,852
mean
48.1
sd
45.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 138728520.43% 92088
chr1 1231073 0.49% 8178
chr2 1182277 0.49% 7835
chr3 947503 0.48% 6294
chr4 780384 0.41% 5188
chr5 846941 0.47% 5618
chr6 867539 0.51% 5752
chr7 729479 0.46% 4839
chr8 676202 0.47% 4485
chr9 569708 0.41% 3785
chr10 687922 0.51% 4564
chr11 676655 0.50% 4496
chr12 673100 0.51% 4467
chr13 435990 0.38% 2891
chr14 425128 0.40% 2820
chr15 437538 0.43% 2911
chr16 394528 0.44% 2619
chr17 501970 0.60% 3338
chr18 344399 0.43% 2279
chr19 379271 0.65% 2520
chr20 329814 0.51% 2194
chr21 159298 0.34% 1057
chr22 204953 0.40% 1361
chrX 373780 0.24% 2482
chrY 17400 0.03% 115
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 92088 23 535 150.65 150
global segment-length histogram

Files

Filename Size md5
ENCFF744LRT.bed.gz 890.36 KB b57e6be733e85cd9e9296b065a2499fa
ENCFF744LRT.tabix.bed.gz 764.17 KB 1c9ffb5e57aa3f41e3287e84b91217b6
ENCFF744LRT.tabix.bed.gz.tbi 445.29 KB 088b19ee7471f12d0e2910f932cf991b
genomic_resource.yaml 1.37 KB a75f5d3b1b511914d6fc5a53d833b5cc
statistics/