Resource

Id DNase-seq/ENCSR585CGUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR585CGU [biosample_summary="Homo sapiens muscle of back tissue female embryo (105 days)"]
Description
Labels
  • accession: ENCSR585CGU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002324/
  • biosample_summary: Homo sapiens muscle of back tissue female embryo (105 days)
  • date_created: 2015-09-16T21:42:58.860837+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR585CGU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR585CGU float

DNase-seq_ENCSR585CGU

DNase-seq ENCSR585CGU [biosample_summary="Homo sapiens muscle of back tissue female embryo (105 days)"]
HISTOGRAM FOR DNase-seq_ENCSR585CGU [3, 923]
n
15,999,392
mean
60.4
sd
75.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 159993920.50% 106396
chr1 1429617 0.57% 9510
chr2 1317244 0.54% 8755
chr3 1066555 0.54% 7090
chr4 864166 0.45% 5738
chr5 918200 0.51% 6105
chr6 977253 0.57% 6503
chr7 822728 0.52% 5469
chr8 776054 0.53% 5165
chr9 689827 0.50% 4583
chr10 775319 0.58% 5154
chr11 797789 0.59% 5312
chr12 783325 0.59% 5209
chr13 466790 0.41% 3099
chr14 509275 0.48% 3387
chr15 509433 0.50% 3387
chr16 479261 0.53% 3188
chr17 601549 0.72% 4002
chr18 372750 0.46% 2480
chr19 499502 0.85% 3326
chr20 400650 0.62% 2668
chr21 189284 0.41% 1260
chr22 262180 0.52% 1747
chrX 472191 0.30% 3136
chrY 18450 0.03% 123
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 106396 14 450 150.38 150
global segment-length histogram

Files

Filename Size md5
ENCFF897TZA.bed.gz 1.01 MB 953b478260b45d09798e4551cb141d36
ENCFF897TZA.tabix.bed.gz 886.21 KB 730bcae1e917fe6ca39cd78ba659134f
ENCFF897TZA.tabix.bed.gz.tbi 499.08 KB 93c09f4c93dfec9ba23c67bdadd7d45b
genomic_resource.yaml 2.61 KB 8a6e266f504f578f94a37917c847b623
statistics/