DNase-seq_ENCSR584LUZ
DNase-seq ENCSR584LUZ [biosample_summary="Homo sapiens Ammon''s horn tissue male adult (84 years)"]
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| Id: | DNase-seq/ENCSR584LUZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR584LUZ [biosample_summary="Homo sapiens Ammon''s horn tissue male adult (84 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (84 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN904KER|/analyses/ENCAN904KER/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF546ZHR|/files/ENCFF546ZHR/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR584LUZ | float |
DNase-seq_ENCSR584LUZ |
DNase-seq ENCSR584LUZ [biosample_summary="Homo sapiens Ammon''s horn tissue male adult (84 years)"]
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[7, 4.01e+05] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF017TAW.bed.gz | 2.25 MB | 0e4a19df114529354164f633d84c5100 |
| ENCFF017TAW.bed.gz.dvc | 101.0 B | 49b6d5ac0bdb1ed6033a9a23f73361ca |
| ENCFF017TAW.tabix.bed.gz | 1.93 MB | e08b4d2b5d2c2168c4ecf12874f9f08b |
| ENCFF017TAW.tabix.bed.gz.dvc | 107.0 B | 53b9e7a882577e083eb1eb26cc86bd94 |
| ENCFF017TAW.tabix.bed.gz.tbi | 721.43 KB | d93a3bb570c523be893dac58374b8a02 |
| ENCFF017TAW.tabix.bed.gz.tbi.dvc | 110.0 B | f3698cc066a1c57a6d23524a62db5bcf |
| genomic_resource.yaml | 2.2 KB | 30f3267bb246dc28df56a6111ffe53b1 |
| genomic_resource_original.yaml | 2.09 KB | a377dabf996dc31b476b17f1864891d3 |
| statistics/ |