Resource
| Id | DNase-seq/ENCSR584LUZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR584LUZ [biosample_summary="Homo sapiens Ammon''s horn tissue male adult (84 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (84 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN904KER|/analyses/ENCAN904KER/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF546ZHR|/files/ENCFF546ZHR/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR584LUZ | float |
DNase-seq_ENCSR584LUZ |
DNase-seq ENCSR584LUZ [biosample_summary="Homo sapiens Ammon''s horn tissue male adult (84 years)"]
|
 |
[7, 4.01e+05] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 35071566 | 1.09% | 233608 |
| chr1 | 3175853 | 1.28% | 21153 |
| chr2 | 2838572 | 1.17% | 18905 |
| chr3 | 2283286 | 1.15% | 15204 |
| chr4 | 1699756 | 0.89% | 11325 |
| chr5 | 2013203 | 1.11% | 13411 |
| chr6 | 2052054 | 1.20% | 13670 |
| chr7 | 1761418 | 1.11% | 11734 |
| chr8 | 1654326 | 1.14% | 11019 |
| chr9 | 1495861 | 1.08% | 9968 |
| chr10 | 1753943 | 1.31% | 11687 |
| chr11 | 1801110 | 1.33% | 11999 |
| chr12 | 1697499 | 1.27% | 11303 |
| chr13 | 988940 | 0.86% | 6589 |
| chr14 | 1129858 | 1.06% | 7530 |
| chr15 | 1100716 | 1.08% | 7329 |
| chr16 | 1178099 | 1.30% | 7847 |
| chr17 | 1435591 | 1.72% | 9562 |
| chr18 | 810332 | 1.01% | 5397 |
| chr19 | 1068328 | 1.82% | 7116 |
| chr20 | 942661 | 1.46% | 6279 |
| chr21 | 410039 | 0.88% | 2729 |
| chr22 | 635290 | 1.25% | 4233 |
| chrX | 1079131 | 0.69% | 7181 |
| chrY | 65700 | 0.11% | 438 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 233608 | 18 | 441 | 150.13 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF017TAW.bed.gz | 2.25 MB | 0e4a19df114529354164f633d84c5100 |
| ENCFF017TAW.tabix.bed.gz | 1.93 MB | e08b4d2b5d2c2168c4ecf12874f9f08b |
| ENCFF017TAW.tabix.bed.gz.tbi | 721.43 KB | d93a3bb570c523be893dac58374b8a02 |
| genomic_resource.yaml | 2.2 KB | 30f3267bb246dc28df56a6111ffe53b1 |
| statistics/ |