DNase-seq_ENCSR582IPV
DNase-seq ENCSR582IPV [biosample_summary="Homo sapiens lung tissue embryo (80 days) and male embryo (76 days)"]
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| Id: | DNase-seq/ENCSR582IPV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR582IPV [biosample_summary="Homo sapiens lung tissue embryo (80 days) and male embryo (76 days)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: embryo (80 days) male embryo (76 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN199MUH|/analyses/ENCAN199MUH/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_not_compliant: Replicate concordance in DNase-seq experiments is measured by calculating the Pearson correlation between signal quantification of the replicates. ENCODE processed signal files {ENCFF830TGU|/files/ENCFF830TGU/}, {ENCFF629AAK|/files/ENCFF629AAK/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly have a Pearson correlation of 0.83. According to ENCODE standards, in an anisogenic assay a Pearson correlation value > 0.85 is recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/} ) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR582IPV | float |
DNase-seq_ENCSR582IPV |
DNase-seq ENCSR582IPV [biosample_summary="Homo sapiens lung tissue embryo (80 days) and male embryo (76 days)"]
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[6, 1.88e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF148PHO.bed.gz | 3.22 MB | aab0a33c13e9cfe90fdf48c9628309e7 |
| ENCFF148PHO.bed.gz.dvc | 101.0 B | 328bb0e0561a072e196196ab8ae0b13e |
| ENCFF148PHO.tabix.bed.gz | 2.78 MB | f1c8a8fcd64198f464a5a6ea11dcbb12 |
| ENCFF148PHO.tabix.bed.gz.dvc | 107.0 B | ceb381c1b4ece1befbc38299004e992b |
| ENCFF148PHO.tabix.bed.gz.tbi | 823.97 KB | 243ec8f89963f011f4d0f47cee5191b9 |
| ENCFF148PHO.tabix.bed.gz.tbi.dvc | 110.0 B | f13a52963764c1fe411051a88c68e874 |
| genomic_resource.yaml | 2.07 KB | 7aaa8f36c630d53eb3b8c37d8d0c5cb9 |
| genomic_resource_original.yaml | 1.96 KB | a737e34d90577e74de8c6efeabcbfd17 |
| statistics/ |